Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4401 ATGGCTTCACAAACTCTCGTCTCACCTTCACCTCTCTCTTCTCACTCTCTTCTCCGAACATCTTTCTCCGGCGTCTCCGTCAAGCTCGCTCCCCAATTCTCAACCCTTGCAACTTCCAATTTCAAACCTCTCACCGTAGTTGCGGCTGCCAAGAAAGCCGTCGCTGTCCTTAAGGGCACATCCGCCGTCGAAGGTGTCGTCACTCTCACTCAAGACGATGAAGGTCCAACAACAGTTAATGTTCGTATCACTGGCCTTACTCCAGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGGTGTATCTCAACAGGACCACATTTTAATCCCAACAAGTTGACACATGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCTGAAGGAGTTGCAGAGGCGACAATCGTGGACAATCAGATACCACTCACTGGCCCCAATTCAGTCGTTGGGAGAGCCTTAGTGGTTCACGAGCTTCAAGATGACCTTGGAAAGGGTGGACATGAACTTAGTTTGAGCACTGGAAATGCTGGTGGAAGATTAGCTTGTGGTGTGGTTGGCTTGACTCCAGTATAA 609 0.491 MASQTLVSPSPLSSHSLLRTSFSGVSVKLAPQFSTLATSNFKPLTVVAAAKKAVAVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLTPV* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4401 202 PRINTS Cu-Zn-superoxide dismutase family signature 92 114 IPR001424 GO:0006801|GO:0046872
Psa7g4401 202 PRINTS Cu-Zn-superoxide dismutase family signature 128 137 IPR001424 GO:0006801|GO:0046872
Psa7g4401 202 PRINTS Cu-Zn-superoxide dismutase family signature 147 169 IPR001424 GO:0006801|GO:0046872
Psa7g4401 202 PRINTS Cu-Zn-superoxide dismutase family signature 172 198 IPR001424 GO:0006801|GO:0046872
Psa7g4401 202 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 37 200 - -
Psa7g4401 202 Gene3D Superoxide dismutase, copper/zinc binding domain 47 201 IPR036423 GO:0006801|GO:0046872
Psa7g4401 202 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 186 197 IPR018152 -
Psa7g4401 202 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 92 102 IPR018152 -
Psa7g4401 202 CDD Cu-Zn_Superoxide_Dismutase 59 194 IPR001424 GO:0006801|GO:0046872
Psa7g4401 202 Pfam Copper/zinc superoxide dismutase (SODC) 63 197 IPR001424 GO:0006801|GO:0046872
Psa7g4401 202 SUPERFAMILY Cu,Zn superoxide dismutase-like 52 199 IPR036423 GO:0006801|GO:0046872
Psa7g4401 202 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 37 200 IPR024134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4401 Psa-Chr7 361661341 361665152 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4401 K04565 - gmx:100815376 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4401 7 361661341 361665152 Psa7g4401 7 361661341 361665152 ECH