Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4300 ATGGCCATGGCGGCACGGAAACCTCGCAACCGTGAAATGCTTTTCGACTCCGTCATCGCTCTCGTCTTCATCCTCGTCGCCTGCGTCGACTTCTGTGACGGCGCTACTGTTGTTGACGTTTACCGCCTAATCCAATACGACATGTCCGGTGTTCCTTTCGGATCTCGACTCGCTAGCCTTAATCACCACGCCGCTTCTCTCCACTTCTCTCCTCATGCCGATCTCTCTCGCACTGTTCTTCTTATACCTCTTCGTGAACTCAACATGTCCTTTGTTCAAGAGTACATTGTTGCTGGCAAGCCTCTGGGGGGTTTAATATTTTTGCTGCCCCAGATGTTCAATTTTGAAAACAAAGGTGGTGTGGGAAGTAATGGTGATGATGAGAGCAAAGAACTGCTGAAGAATGTGCTGGCTGAGCTTGAACAAATACTTATACACACCAGCTTACCTTATCCTGTTTATTTTGCTTTTGAGGATGACAACATTGATGCTGTGTTATTGGATATCAAGAAGAATGATGCATCTGGTCAGCCTGCCACTGCAACTACTGGCGGGTACAAATTTGTTGTTTCAGCCACTGAGCCAAAAAAAGTTGGATCTCCACCCATTACAAATATTCAGGGATGGTTGGCAGGGCTGAAGACAGATGGTGATTCACATCAATTACCCACCATTGCCATAGTGGCATCATATGACACCTTTGGGGCTGCTCCGGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTCGAAGTAGCTAGATTGTTTTCTCTTTTATATTCTAATCCGAAGACAAGAGGACAATACAATTTGCTTTTTGGGCTAACGTCTGGTGGGCCTTACAACTACAACGGAACCCGTAAGTGGCTTCAGAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCGATTTGCTTAGATAGTATTGGCTCATGGGAAAATGAATTATGGATTCATGTATCTAAACCTCCAGAAAATGCCTTTATTAAGCAAATTCTAGAAGATTTTTCAAGTGTTGCAGAAGAGTTGGGTGTCCAAGTTAATCTGAAGCATAAGAAAATAAATATTTCAAATTCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACGGCTGCTACCCTCTCTGAACTATCTACAGCACCTGAATTGCTAGAGAGCACTGGTGGTTTGCTTGATGGCAGGCAATTTGTCAATGAAGCGGCTATTGTCAGGAGTGTGAAACTAATTGCCGAGTCTCTTGCGAAGCATATTTATGGGCATCAAGGAAAAAACGTACAGATTTTTGCAGACAACAGTAACTTGGCTGTAAATCCTTCTTATGTTAGATCATGGTTAGATGTTTTGTCGCGAACACCTCGAGTAGCACCATTTTTGTCAAAAGACGATCCTTTTATTACGGCATTGAAAAAGGAATTAGAAGATCATACAGATGAAGTTAATGTGCAAAGAGAAATACTAGATGGGATGTTCACTTTCTATGATTCAACTTCGGCAAAGTTGAACATATATCAGGTTGCCAGCGTCACATTTGACTTACTGTTGCTTCTAGTGTTGGGTTCATATTTAATTGTGCTCTTCAGTTTCTTGGTCATCACTACTAGGGGTCTTGATGATCTAATCAGTTTATTTCGGCGGCCTCCTTCTAGAAAAGTGAAGACTGCATAA 1695 0.4295 MAMAARKPRNREMLFDSVIALVFILVACVDFCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVQEYIVAGKPLGGLIFLLPQMFNFENKGGVGSNGDDESKELLKNVLAELEQILIHTSLPYPVYFAFEDDNIDAVLLDIKKNDASGQPATATTGGYKFVVSATEPKKVGSPPITNIQGWLAGLKTDGDSHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLQSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKQILEDFSSVAEELGVQVNLKHKKINISNSRVAWEHEQFSRLRVTAATLSELSTAPELLESTGGLLDGRQFVNEAAIVRSVKLIAESLAKHIYGHQGKNVQIFADNSNLAVNPSYVRSWLDVLSRTPRVAPFLSKDDPFITALKKELEDHTDEVNVQREILDGMFTFYDSTSAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4300 564 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Psa7g4300 564 PANTHER NICALIN 9 563 - -
Psa7g4300 564 CDD M28_nicalin_like 137 430 - -
Psa7g4300 564 PANTHER NICALIN 9 563 IPR016574 GO:0009966|GO:0016020
Psa7g4300 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Psa7g4300 564 Pfam Nicastrin 225 361 - -
Psa7g4300 564 SUPERFAMILY Zn-dependent exopeptidases 189 389 - -
Psa7g4300 564 PIRSF Nicalin 3 559 IPR016574 GO:0009966|GO:0016020
Psa7g4300 564 Gene3D Zn peptidases 147 398 - -
Psa7g4300 564 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4300 Psa-Chr7 349593786 349603136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4300 7 562 EF-hand Containing Proteins AT3G44330 74.419 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4300 - - mtr:MTR_4g052530 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4300 7 349593786 349603136 Psa7g4300 7 349593786 349603136 ECH