Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4296 ATGGGTGTACCAGTGTTTTACAGATGGTTAACCAAGAAATATGAAAAGGTTATTGAAGATGCTAACAGCAACACTACTCCAACTGTGGAATATGATAATCTTTATCTTGATATGAACTCTATTATTCATCCATGTTTTCACCCCAACGATGATAACATCAATACTTGTCCTCCAACAACATTTGTGGAAGTGTTTGCAAACATGTTTGACTACATTGATCACCTTGTTACCATTGTTAAACCTCGCAAGCTACTGTACATGGCTATTGATGGAGTTGCACCACGAGGCAAAATGAATCAGCAAAGGACAAGACGTTTTACAACTGCTAAAGATGATGAAATGCGTGAAGCTGAGGAGGAGAGACTGAGGAAGCAGTTTGAAATGGAAGGAAAACAAGTTGTTCCTAAACAAAAATGTGAAGTGTCAGATTCAAATATAATCACACCAGGAACTGAGTTCATGCATGAACTATCAAAGGCTCTTAAAAACTATGTCTCTTCAAGAATATCTTCTCATTCATTATGGAAGGATATTATGGTAATTTTATCTGATTCTAATGTTCCTGGAGAAGGAGAACATAAGATTATGTCATTCATAAGAAAACAACGCGGACTTTCTGATTATGATCCTAACACTGTCCACTGCTTATATGGCTCGGATGCTGATCTCATAATGCTTGGATTGTCAAGCCATGAGCCTCACTTTTCAATTATACGAGAGCTTTTGCATATTTGGTTGTTGAGGGAGTATCTTGAACTAGACATGAAGATAGAAGATCCTCCCAAAAACTTCGTTGTTGATTTTGAGCGGATAGTTGACGATTTTATCTTCATTTGTTTCTTTGCTGGAAATGATTTTCTTCCTCGGTTACCCTCTCTGGATATTTATGAGGGGGCTATTGATTTACTCATGACAGTTTACAAGCAAGAGTTTCATAAACTTGGAGGATATCTCGTCGACATATCTAAGATGGGTGAGAAGCATAGTGCTTTTGTGAAGCTATCAAGAGTTGAAAAATTCATACTCATGGTTGGTACATATGAAGAAAAAATATTCAATAAAAGAAGTGCAATTAGAGACAAGAAACTGAGAAGGCTTATTACTGATCATGAAAATTCAAGGCAAGAAGAACATGATGCATGTAATTTCATCGATATTGAGAATGAAAATAGTTCAGATTGTGCACTTCGTATTAACAAGGCAGCAGCCTCTAACAATGTTTGTCCTGTGTCTGATGAAGAAATTTTGAAAAACACAAATGATTTTAAAGAAGAGTTAAAGAAATGCCTTAAAGCTAAAGGGGACTTATTTACGAGTGGAGATTTCTTGACTGACAAGATAAAATTGGGAACCGTCGGCTTTAAAGAAAGGTATTATAAGGAGAAATTTTCTGTGGAGGGTTCCACCAGCATTGATGTAAAAAGGAAAGAAGTAGTCCAGAAGTACACTGAAGGATTATTGTGGGTTCTTGAGTACTATTTTTCAGGAGTTGCATCATGGACATGGTTTTATCCGTTTCATTATAGTCCATTTGCTTCAGACTTTAAGGGAATGGGTCAAGTTAGAGTAAATTTTGAGAAAGGTGTTCCATTCTTGCCTTTTGATCAACTCTTAAGTATTCTTCCTCAAAGGAGTTCTTATGCGCTTCCTAAAGCTTATGCACAGTTGATGTTGGATGATCAGTCTAAAATATTTGACTTGTTTCCTAAGCAATTCGAAGTTGACATAGAAGGGAAGCGCTTCAGATGGATGGGTGTATGCAAACTTCCATATATCGATGAAAGGAGGCTTTTGGCTGAAACGAGAGAACTCGTAAAGGGACTATCTGAAAACGAAGCATTGAGAAATTCGGTTGAAGTTGATAGGTTGTTGGTTGGTAGCACTACCAAGTTGGCAGAAAAAATTTGCTCCTTAAGTTCAAACAAGTTAGATACTAGCATAAGTGATGGCATTGGAGGCATCATAAGTCTTTGTCACAAGTGTGTCGAGGACAACGAACACGAAGATTCTGTCTTTTGTGTCAAATACGAGCTACCTGTAAACGGTACTAGTTGTTATCAGCATTTGCTATTTGGTGTAAACCTTCCTGAGAAGACAATATTTGAAAATGACATAGATGAAACGGTTCTGTGGCACGAACAACAGGAATATCCTAGTCGTTTTGAAAGGTTCGGGCCGTGGTCTCATAATCAAGACAGTTGGAGAAGTTCAAACAGAGAGGATAGGTCTTCAAAGTTTCCACCTAATAGAACTACTTTTGGTGGAAGAAGCTCTTCACAAAATGCACCTCCTGAGTTTATTCACAAAGGTGGAGGTGTTGGATGGGGTTCAGGTAGAGGAAAACCTGATAGGATTAATCGTGAAACTCTAAATGATCGAATGTCATCGTTTTCTCCTTTTCGCAAACAACAATCTAATGATCATGGAGGATCTAACTATCATCATCAATCTTTGAATAATGTGCCTTATAGTCGGGGACGAGGTAGGACATATCAGAACTCGAATAATGTGTATTCATCGAGGCACATATCTTCTAGTTCAAGTAACTCATTGCGGCCTCAGTGGAGTGAGTCAGACGATAAAAGTCGTTGGTAG 2595 0.3788 MGVPVFYRWLTKKYEKVIEDANSNTTPTVEYDNLYLDMNSIIHPCFHPNDDNINTCPPTTFVEVFANMFDYIDHLVTIVKPRKLLYMAIDGVAPRGKMNQQRTRRFTTAKDDEMREAEEERLRKQFEMEGKQVVPKQKCEVSDSNIITPGTEFMHELSKALKNYVSSRISSHSLWKDIMVILSDSNVPGEGEHKIMSFIRKQRGLSDYDPNTVHCLYGSDADLIMLGLSSHEPHFSIIRELLHIWLLREYLELDMKIEDPPKNFVVDFERIVDDFIFICFFAGNDFLPRLPSLDIYEGAIDLLMTVYKQEFHKLGGYLVDISKMGEKHSAFVKLSRVEKFILMVGTYEEKIFNKRSAIRDKKLRRLITDHENSRQEEHDACNFIDIENENSSDCALRINKAAASNNVCPVSDEEILKNTNDFKEELKKCLKAKGDLFTSGDFLTDKIKLGTVGFKERYYKEKFSVEGSTSIDVKRKEVVQKYTEGLLWVLEYYFSGVASWTWFYPFHYSPFASDFKGMGQVRVNFEKGVPFLPFDQLLSILPQRSSYALPKAYAQLMLDDQSKIFDLFPKQFEVDIEGKRFRWMGVCKLPYIDERRLLAETRELVKGLSENEALRNSVEVDRLLVGSTTKLAEKICSLSSNKLDTSISDGIGGIISLCHKCVEDNEHEDSVFCVKYELPVNGTSCYQHLLFGVNLPEKTIFENDIDETVLWHEQQEYPSRFERFGPWSHNQDSWRSSNREDRSSKFPPNRTTFGGRSSSQNAPPEFIHKGGGVGWGSGRGKPDRINRETLNDRMSSFSPFRKQQSNDHGGSNYHHQSLNNVPYSRGRGRTYQNSNNVYSSRHISSSSSNSLRPQWSESDDKSRW* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4296 864 Pfam XRN 5'-3' exonuclease N-terminus 1 240 IPR004859 GO:0003676|GO:0004527
Psa7g4296 864 Gene3D - 520 618 - -
Psa7g4296 864 MobiDBLite consensus disorder prediction 730 781 - -
Psa7g4296 864 PANTHER 5'->3' EXORIBONUCLEASE 1 738 IPR027073 -
Psa7g4296 864 CDD PIN_XRN1-2-like 34 251 - -
Psa7g4296 864 Pfam Xrn1 helical domain 266 705 IPR041412 -
Psa7g4296 864 MobiDBLite consensus disorder prediction 795 864 - -
Psa7g4296 864 PANTHER OS11G0157000 PROTEIN 1 738 - -
Psa7g4296 864 Gene3D - 133 313 - -
Psa7g4296 864 Gene3D - 1 132 - -
Psa7g4296 864 MobiDBLite consensus disorder prediction 795 855 - -
Psa7g4296 864 MobiDBLite consensus disorder prediction 747 764 - -
Psa7g4296 864 PIRSF Exonuclease_Xrn2 240 863 IPR017151 GO:0004534|GO:0005634|GO:0006139
Psa7g4296 864 PIRSF Exonuclease_Xrn2 1 242 IPR017151 GO:0004534|GO:0005634|GO:0006139
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4296 Psa-Chr7 349493446 349498188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4296 - - cam:101491694 1251.5