Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4271 ATGAGGTTTCGAATAGTGAGAGATGCAGTTGTATACCGAGACCATGTTCAAGCAATCAAATCTGGTTTTACATCAAGTGTTTTCACTTGTAATCAATTGATTCACCTTTATTATAACCATGGTCTTTTGCAAGATGCCCACAAACTGTTCGACGAAATGCCCCATCGAAATGTATACTCTTGGAATGCCCTTATTATGGCTTACATAAAAGCACACAACTTGACACAAGCACGGGCCATTTTTGATTCAGCCTCTCATAGAGATTTGGTTTCATATAATTCTATGTTGTCAGCTTATGTTGGTGCTGACGGACACGAGACCGAGGCACTTGATTTGTTTAATAGAATGCAATCTGCACGTGACACAATTGGGATTGACGAGTTCACTCTCACAACAATGCTTAACCTTACTGCGAAGCTACAGGTAGTTTGTTATGGGAAGCAGATGCATTCACATATGGTGAAAACTGCAAATGATTTAAGCAAGTTTGCGTCGAGTTCTCTTATTAACATGTACTCTAAATGTGGGTTGTTTCTTGAAGCGTGCAATGTGCTTAGTGGTTGTGATGGGGTGGTGGACTTGGTTTCTAAGAATGCAATGGTTGCTGCTTGTTGTAGGGAAGGGAAAATGGACATGGCTTTGAATGTCTTTTGGAAAAATTCTGAGTGCATCCATGCGTGGGTGTTGAAAAATGACTTCAGTACTAATCAATTCATTAGCAGCGGCATCGTAGACTTATACTGCTATTCATCTCAAGGCAACATGACAAAAGCCCAAAGGCTTTTTGATACTCTATTGGAAAGAAATTATGTTGTCTGGACAGCTCTATGTTCCGGCTATGCCAAATCACAACAATCTGAGGAAGTCTTCAAACTTTTCAGAGAATTTATAAATACCGAAGCACTAATTCCTGATGCAATGATCATCGTGAGTGTGCTTGGTGCCTGTGCAACACAAGCCACTCTTTGTTTTGGGAAACAGGTTCATACGTACATCTTGAAAATGAGACTTAATATGGATAAAAAAATGCTGAGTGCCATGGTTGATATGTACTCAAAATGTGGTAATATCATGTACGCGGAGAAAAGCTTCCAATTAATGACTGATAAGGATAGAGATGCAATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCTATTCAACTTTTTCGGGACATGTTAAAGAAAAGTGTCAAGCCAGATGCAGTCACTTTTGTAGCGCTTCTATCTGCTTGTCGGCACCGTGGACTTGTAGAACAAGGAGAGAATTTGTTTATCTCTATGCAAGAAGATTACAATGTATTGCCCGAGATATACCACTATGCATGTATGGTTGATATGTATGGAAGGGCTAATCAACTAGAAAAGGCGGTAGAATTCATGAGGAAGATTCCCATACAAATAGATGCAACAATTTGGGGAGCATTTCTTAATGCTTGTCAGATAAACAATAACACATCCCTTGTCAACCTGGCAGAAGAGAAACTGTTAAAAGTTGAGTCTCATAATGGGTCTCGGTATGTGCAATTGGCCAATGTCTATGCTACTGAGGGAAAGTGGGATGAGATGGGAAGAATAAGGAAGAAGATGAGAGTGAAGGAGGCAAAAAAGATTGCTGGTTGTAGTTGGATATATGTGAAAAATGGTATTCATGCATTTACTTCTGGTGATAAATCTCATGCAAAAGCAGATGCAATATATTCAACTTTGTTGTGCTTGAATAGGGACAGAACTGAAGCAATTTCATGA 1770 0.391 MRFRIVRDAVVYRDHVQAIKSGFTSSVFTCNQLIHLYYNHGLLQDAHKLFDEMPHRNVYSWNALIMAYIKAHNLTQARAIFDSASHRDLVSYNSMLSAYVGADGHETEALDLFNRMQSARDTIGIDEFTLTTMLNLTAKLQVVCYGKQMHSHMVKTANDLSKFASSSLINMYSKCGLFLEACNVLSGCDGVVDLVSKNAMVAACCREGKMDMALNVFWKNSECIHAWVLKNDFSTNQFISSGIVDLYCYSSQGNMTKAQRLFDTLLERNYVVWTALCSGYAKSQQSEEVFKLFREFINTEALIPDAMIIVSVLGACATQATLCFGKQVHTYILKMRLNMDKKMLSAMVDMYSKCGNIMYAEKSFQLMTDKDRDAILYNVMIAGYAHHGFENKAIQLFRDMLKKSVKPDAVTFVALLSACRHRGLVEQGENLFISMQEDYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIPIQIDATIWGAFLNACQINNNTSLVNLAEEKLLKVESHNGSRYVQLANVYATEGKWDEMGRIRKKMRVKEAKKIAGCSWIYVKNGIHAFTSGDKSHAKADAIYSTLLCLNRDRTEAIS* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4271 589 TIGRFAM PPR: pentatricopeptide repeat domain 28 58 IPR002885 -
Psa7g4271 589 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Psa7g4271 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 119 IPR002885 -
Psa7g4271 589 PANTHER - 230 584 - -
Psa7g4271 589 PANTHER - 15 218 - -
Psa7g4271 589 Pfam PPR repeat 90 118 IPR002885 -
Psa7g4271 589 Pfam PPR repeat 59 82 IPR002885 -
Psa7g4271 589 Pfam PPR repeat 166 185 IPR002885 -
Psa7g4271 589 Pfam PPR repeat 447 470 IPR002885 -
Psa7g4271 589 Pfam PPR repeat 196 217 IPR002885 -
Psa7g4271 589 Pfam PPR repeat 28 57 IPR002885 -
Psa7g4271 589 Pfam PPR repeat 345 370 IPR002885 -
Psa7g4271 589 Pfam PPR repeat 271 296 IPR002885 -
Psa7g4271 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Psa7g4271 589 Gene3D Tetratricopeptide repeat domain 10 120 IPR011990 GO:0005515
Psa7g4271 589 Gene3D Tetratricopeptide repeat domain 342 584 IPR011990 GO:0005515
Psa7g4271 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Psa7g4271 589 Pfam PPR repeat family 373 419 IPR002885 -
Psa7g4271 589 Gene3D Tetratricopeptide repeat domain 137 222 IPR011990 GO:0005515
Psa7g4271 589 Gene3D Tetratricopeptide repeat domain 223 324 IPR011990 GO:0005515
Psa7g4271 589 Pfam E motif 491 551 IPR046848 -
Psa7g4271 589 PANTHER - 230 584 - -
Psa7g4271 589 PANTHER - 15 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4271 Psa-Chr7 346988203 346990236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4271 63 577 Glycoside Hydrolase AT3G49170 31.397 3.70e-87 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4271 - - gmx:100803987 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4271 7 346988203 346990236 Psa7g4271 7 346988203 346990236 ECH