Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4253 ATGGCTTTCTGTTCGCATCTTTACCGTCTCCCCGTCACTCGCATCGACGTTCCTTCTCCGGTCAGATTCCGGTGCGGTAAAGTCTTCTCCGTCCGTTCTTCCGCTGACTCCGATTTTGATCCAAAGGTGTTCCGAAAGAATCTCACCAGAAGCGATAATTATAACCGCAAAGGATTCGGACACAAGGAAGAGACCCTCAAACTCATGAATCGCGAGTATACCAGTGACATTATTAAGACATTGAAGGAAAATGAGTATGAGTATACATGGGGTAATGTCACTGTTATGCTAGCGGAAGCCTTTGGTTTTTGTTGGGGTGTTGAGAGGGCGGTTCAAATTGCTTATGAGGCAAGAAAACAGTTTCCTAATGAAAAAATTTGGATTACCAATGAAATCATCCATAATCCAACTGTTAATAAGCGGCTAGAGGAAATGGAAGTGCAGAACATTCCTCTTGGAGAAGGAAAGAAACAATTTGAGGTTGTCAACAAGGGTGATGTAGTAATATTGCCTGCTTTTGGAGCCGCAGTCGACGAAATGTTGACTTTGAGTGACAAAAATGTTCAAATCGTTGATACAACTTGCCCGTGGGTTTCAAAGGTATGGAATGTTGTCGAGAAACACAAGAAAGGAGATTATACCTCGATAATTCATGGTAAATATGCCCATGAGGAAACGGTAGCAACTGCTTCTTTTGCTGGAAAGTACATAATTGTGAAAAATATGGCAGAGGCTGAATATGTTTGCGACTATATTCTTGGTGGTGAACTTAATGGATCCAGCTCAACTAGAGAGGCATTTTTTGAGAAATTCAAATTTGCAATTTCTGAGGGCTTTGATCCAGACAGTGACCTGATCAAACTTGGCATTGCAAACCAGACAACAATGCTCAAGGGAGAAACTGAAGAGATTGGGAAACTAGTGGAGAGAACTATGATGCGCAAATTTGGTGTGGAAAACGCTACTGAGCATTTCATAAGCTTCAACACAATTTGTGATGCTACCCAGGAGCGACAAGATGCTATATACAAGCTGGTAGAGAAAGATATGGATCTCATGTTGGTAGTTGGTGGCTGGAACTCGAGCAATACATCCCACCTTCAAGAGATAGCTGAGGAACGCGGAATTCCTTCTTACTGGATTGACAGTGAGCAAAGAATCGGTCCGGGAAACAGAATAGCACACAAGTTGAACCATGGCGAGCTTGTGGAAACAGAAAACTTTCTACCAAAGGGTCCATTAAGGATCGGTGTAACATCTGGTGCGTCCACGCCAGACAAGGCCGTGGAAGATGCGCTGATCAGGGTGTTCGACTTGAAAAGTGAAGAAGCATTACAACTCGCATAA 1347 0.4313 MAFCSHLYRLPVTRIDVPSPVRFRCGKVFSVRSSADSDFDPKVFRKNLTRSDNYNRKGFGHKEETLKLMNREYTSDIIKTLKENEYEYTWGNVTVMLAEAFGFCWGVERAVQIAYEARKQFPNEKIWITNEIIHNPTVNKRLEEMEVQNIPLGEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSDKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGELNGSSSTREAFFEKFKFAISEGFDPDSDLIKLGIANQTTMLKGETEEIGKLVERTMMRKFGVENATEHFISFNTICDATQERQDAIYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAHKLNHGELVETENFLPKGPLRIGVTSGASTPDKAVEDALIRVFDLKSEEALQLA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4253 448 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 93 440 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Psa7g4253 448 Coils Coil 442 448 - -
Psa7g4253 448 Gene3D - 104 194 - -
Psa7g4253 448 Gene3D - 329 447 - -
Psa7g4253 448 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 95 432 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Psa7g4253 448 CDD lytB_ispH 95 436 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Psa7g4253 448 Gene3D - 195 328 - -
Psa7g4253 448 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 30 446 - -
Psa7g4253 448 Pfam LytB protein 95 432 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4253 Psa-Chr7 346007893 346011302 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4253 K03527 - gmx:100818067 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4253 7 346007893 346011302 Psa7g4253 7 346007893 346011302 ECH