Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4248 ATGGACATTGATTTCAAAGAGTATCAGTTACGCTGTGAACTTCACGGCCACGAAGACGACGTTCGTGGAATAACCATCTGCGGCAACGGCGATATAGCCACATCATCCAGGGACAAAACCGTTAGGTTATGGTCTCAGGAAAATCGCAAATTCGTCTCTTCCAAACTTCTGGTAGGTCACACCAGCTTCGTCGGTCCGTTGACATGGATTCCTCCAAATTCCGATTTGCCTCAGGGCGGCGTCGCTTCTGGCGGCATGGATACTCTTGTCTTGGTTTGGGACTTGAACACAGGTGGGAAGTTTCATACACTCAAAGGTCATCAATATCAGGTCACCGGCATTGCGTTTGATGATGGAGATCTTGTTTCATCTTCCATTGATTGTACTTTGAAGCGGTGGAGGAATGGGCAATGCGTTGAGACATGGGAGGCTCACAAGTCAGCGATTCAAGCAGTTATAAAGCTACCCACAGGAGAGCTTGTTACAGGTTCAAGTGACACCACTTTAAAGACTTGGAAGGGAAAAACTTGTTTACATACTTTTGAAGGACATTCAGATACAGTTCGTGGCTTGGCTGTGATGTCTGATCTAGGAATCCTATCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTGTTAATGGAGATGGTAGGTCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGCAGCGAAGACCGTTTTGCAAAAGTATGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGTGTTTGGGATACAAAATTTATGGAAAATGGGGATATTGTGACAGCATGTTCTGATGGAGTCGTACGCATTTGGACCATAAATCAAGATTATTTTGCTGACCAGCTAGAGCTTGATCTATACACTTCGCAACTTTCTCAGTACAAGTCTAGCAGAAAGAGGGTTGGTGGATTAAAATTGGAGGAGTTACCAGGCTTGGATGCACTGAAGATCCCAGGAACTTCTGATGGCCAGACAAAAGTAGTTAGAGAGGGAGATAATGGGGTGGCTTATGCATGGAACATGGCAGAACAGAAATGGGATAAAATTGGTGAAGTTGTTGATGGACCAGAAGGATCAAGTCGCCCTCTCTTCGATGGTGCTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTATCAGGAAGTTGCCATACAACCGATCAGATAATGCTTATGATGTTGCTGATAAATGGCTACTCAAGGAGGGTCTTCCTCTTTCCTTTCGTGAACAAGTTGTACAGTTCATACTTCAAAATAGTGGACAAAAGGATGTTACTTTTGATGCTTCATTTCGTGATCCATACACCGGCTCCAATGCTTACGTACCAGGTCAACATTCACGTACATCCGATATCTCTGCAAAGCCTACATTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATACTGCTCAGTTTGATGGGATCCTTAAAAAGGTTGTTGAGTTCAATAATGCCTTATTATCAGACCAGGAAAAGCAGAAGTTGTCTTTGGCTGAGTTGGATGTTTCCAGACTGGATGCCATTGTTAAAACACTGAAAGATACTTCACATTATCATTCCAGTAAATTTGCAGACTCTGAAATAGCCTTGCTAATGAAAATGCTATCTTCATGGCCAATCACAATGATATTTCCTGTCATTGATATTGTAAGGATGTTAGTTCTTCACCCAGAAGGGGCTGTTGCACTTCACAAGCATCTTGAATCTGAAAAAGACATTTTAATGGAAGTGGTTAAGAAGGTCACAATAAACCCAACAATCCCTGCAAATCTGTTGACCAGTGTTCGTGCCGTCACTAATCTCTTTAAGAATTCATGCTACTACAACTGGTTGCAGAAACATCGCAGTGAGATTCTTGATGCTTTCTCAAGCTGTAGTGCATCTACAAACAAAAATTTGCAGTTGTCCTACTCTACATTGATACTCAATTATGCAGTATTATTGATTGAATCTAAGGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCACTGGAGATTGTCGAGGATGAAAATGTAGGACCTGATTCAAAATTCCGTGCTTTAGTTGCTGTTGGATCACTGATGCTTGAGGGACTTGTCAAAAAAATAGCACTGGACTTTGATGTTTTGAGCATTGCAAAAGCAGCCAAAGGTTCTAAGGACTCCAAGATTGCTGAAGTTGGATCTGACATCGAGCTAGTATCAAATCAGAGCTGA 2268 0.4211 MDIDFKEYQLRCELHGHEDDVRGITICGNGDIATSSRDKTVRLWSQENRKFVSSKLLVGHTSFVGPLTWIPPNSDLPQGGVASGGMDTLVLVWDLNTGGKFHTLKGHQYQVTGIAFDDGDLVSSSIDCTLKRWRNGQCVETWEAHKSAIQAVIKLPTGELVTGSSDTTLKTWKGKTCLHTFEGHSDTVRGLAVMSDLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDTKFMENGDIVTACSDGVVRIWTINQDYFADQLELDLYTSQLSQYKSSRKRVGGLKLEELPGLDALKIPGTSDGQTKVVREGDNGVAYAWNMAEQKWDKIGEVVDGPEGSSRPLFDGAQYDYVFDVDIGDGMPIRKLPYNRSDNAYDVADKWLLKEGLPLSFREQVVQFILQNSGQKDVTFDASFRDPYTGSNAYVPGQHSRTSDISAKPTFKHIPKKGMLVFDTAQFDGILKKVVEFNNALLSDQEKQKLSLAELDVSRLDAIVKTLKDTSHYHSSKFADSEIALLMKMLSSWPITMIFPVIDIVRMLVLHPEGAVALHKHLESEKDILMEVVKKVTINPTIPANLLTSVRAVTNLFKNSCYYNWLQKHRSEILDAFSSCSASTNKNLQLSYSTLILNYAVLLIESKDQEGQSQVLSAALEIVEDENVGPDSKFRALVAVGSLMLEGLVKKIALDFDVLSIAKAAKGSKDSKIAEVGSDIELVSNQS* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4248 755 Pfam WD domain, G-beta repeat 255 289 IPR001680 GO:0005515
Psa7g4248 755 Pfam WD domain, G-beta repeat 176 211 IPR001680 GO:0005515
Psa7g4248 755 Pfam WD domain, G-beta repeat 100 133 IPR001680 GO:0005515
Psa7g4248 755 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Psa7g4248 755 Pfam WD domain, G-beta repeat 136 173 IPR001680 GO:0005515
Psa7g4248 755 Pfam WD domain, G-beta repeat 217 252 IPR001680 GO:0005515
Psa7g4248 755 Gene3D - 480 751 IPR011989 -
Psa7g4248 755 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 211 - -
Psa7g4248 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 103 IPR001680 GO:0005515
Psa7g4248 755 ProSiteProfiles PUL domain profile. 480 751 IPR013535 -
Psa7g4248 755 ProSiteProfiles PFU domain profile. 356 451 IPR015155 -
Psa7g4248 755 Gene3D - 4 307 IPR015943 GO:0005515
Psa7g4248 755 Pfam PUL domain 482 747 IPR013535 -
Psa7g4248 755 SUPERFAMILY WD40 repeat-like 5 301 IPR036322 GO:0005515
Psa7g4248 755 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Psa7g4248 755 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Psa7g4248 755 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Psa7g4248 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515
Psa7g4248 755 CDD WD40 10 289 - -
Psa7g4248 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 211 IPR001680 GO:0005515
Psa7g4248 755 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Psa7g4248 755 SMART WD40_4 214 252 IPR001680 GO:0005515
Psa7g4248 755 SMART WD40_4 135 173 IPR001680 GO:0005515
Psa7g4248 755 SMART WD40_4 97 134 IPR001680 GO:0005515
Psa7g4248 755 SMART WD40_4 7 45 IPR001680 GO:0005515
Psa7g4248 755 SMART WD40_4 174 212 IPR001680 GO:0005515
Psa7g4248 755 SMART WD40_4 253 290 IPR001680 GO:0005515
Psa7g4248 755 SMART WD40_4 50 94 IPR001680 GO:0005515
Psa7g4248 755 Pfam PFU (PLAA family ubiquitin binding) 336 444 IPR015155 -
Psa7g4248 755 Gene3D - 375 449 IPR038122 -
Psa7g4248 755 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Psa7g4248 755 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 751 - -
Psa7g4248 755 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 751 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4248 1 754 Acyl Lipid Metabolism Gene Families AT3G18860 70.185 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4248 K14018 - gmx:100816481 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4248 7 345901435 345918111 Psa7g4248 7 345901435 345918111 ECH