Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4229 ATGGGGAAGGCGAAAGCAAAAGGTAAGCATCGTTTGGATAAGTGGTACCACTTAGCCAAAGAAACCGGTTACAGATCCAGAGCATCCTTCAAACTCCTTCAGATTAATGGAAAGTTCGATTTCCTCAGTTCCGCACGCGCCGTCCTCGATCTCTGCGCCGCTCCCGGAGGTTGGATGCAGGTGGCGGTCAAACATGTTCCCAAAGGCAACCTTGTCATCGGAGTTGACCTTGCCCCTATCGCTCCCATGATTGGAGCCACCGCTATTCAGGAGGATATCACGAGACCTGAGTGCAAGTCACGAATTAAGAAAATCATGAACCAAAATGGTTGTAGTACTTTTGATGTTATTCTTCACGATGGTTCGCCGAATGTCGGTGGTGCTTGGGCTCAAGAAGCTACGAGTCAGAATGCTCTTGTTATTGACTCTGTTAAGTTGGCTACACAGTTTTTATCACCTAAGGGCACTTTTGTTACTAAGGTTTTCAGGTCGCAGGATTACAGTGCCGTTGTGTATTGTTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAACCGATTGCCAGTCGATCTGAATCTGCTGAGATATATCTTGTTGGGCTTAAGTACAAGGCCCCTGCTAAGATTGATCCTCGCCTTCTCGATTACAAGCATCTTTTTCAGGCATCTGCTCAGCCACAAGCCAAGGTGGTGGATGTTCTCAGAGACAATAAGCAAAAGAGGCATCGAGACGGGTATGAAGATGGAATCACAACTTTGAGGAAGGTTTCTTCAGCTGCAAGTTTTATTTGGTCAGATGCTCCTCTGGAGATTCTTGGTTCAGTTACTTCTATAAGCTTTACGGATCCCGCCGATTTAAAAATCAAGGATAACAAACTAACTACTGAAGAGGTAAAATCTCTCTGTGAAGATTTGAGGGTTTTGGGGAAGCAAGACTTCAAGCATCTTTTAAAGTGGAGGATTCACATTAGAAAAGCTCTTTCACCGTCTAAAAAGACCGAACCTGCTTCTACAGCTGTGGTAGAAAATGAGAATGAGGTGGATGAAGATGATAGACTACTCAACGAAATGGAGGAACTGACAAATGCACTGGACCGCAAGAAGAAACGTGAAAAAAAGATTCTAGCGAAAAGAAGAGCTAAGGACAAGGTGCGGAAAGCGACTGGGATGCAAATGGATGCAGTAGAAGATTATGTTGATCATGAGTTGTTTTCTCTTGCCTCCATGAAGGGTAAGAAGGATCTGGTAGCTGTTGACACCACTGACTATGAAGGCGGTGAGGGTGAAGGAGATGACAGTGAGAATGAAGAAAACAAAGGTGGCTCAGAGCATTCATCCAGTGACTTAGATTCTGATGAAGAACGTAAAAGGTATGATGAACAAATGGAAGATTTACTTGAACAAGCTTATGAGCGGTTTGTGATAAAAAAGGAAGGGACTGCAAAGCAGCGTAAGAGAATTAAAAACTCCTATGATGCAGACTCCCAACTTTTGGAGGCTGTTGAAACTGATGACATTGTTCAGTCCAATTATGATTCAGACGAAGATGAGGGCGTTCAAGAAGCAAACCCTTTGATGGTGCCCCTTAATGATGGGGCAGCGCTCACCCAAGAGGAGATCACAAATACATGGTTTAATCAGGATGTCTTTGCTGAAGCTGTAGAGGAACGAGATGTCGAGAAGGATGATAGTGAAAATGAAATGGATATTGATGGGCCAAAGGAGAAGATGCCCGTTGCTATCAACATCAAAGGAAGTAAGTCTGTTTCAGAAAAGATAAAAGAAAATAAATCTGCTGCTTCTGCGGTGATGGATCGCACTCAACCTCAAGCGTCTAAGGAGATGGATTATGAGGTTGTTCCTCAACCTGATACTGATTCAGATGATTCGTCCTCTGATGAGTCGGATGATGATGTTGAAACAAAAGCTGAGATATTGGCTTTAGCTTCAAAGATGTTAAGGAAAAGGAAAAGGGAACAAATCCTGGATGATGCATATAATAAGCACATGTTTCATGATGAAGGTTTGCCCAAGTGGTTTATAGATGAGGAAAGGAAACACCGTCAACCAGAAAAGCCTATCACTAAAGAGGAAGTTGCAGCAATGAAAGCACAATTTAAAGCAATTGATGCCCGGCCTGCAAAGAAGGTTGCTGAGGCCAAAGCCCGAAAGAAGCGTGTTGCAATGAGGAAGCTTGAGAAAGTACGCAAGAAGGCCAATGTTATATCAGATCAGCCAGACATATCCGAACGTTCAAAGAGTAAGCAAATTGATCGACTATATAAAAAAGCTGTTCCAAAAAGGCCTCAAAAGGAGTATGTAGTTGCAAAGAAAGGTGTTCAAGTTAAGACTGGCAAGGGAAAAGTTCTTGTTGATCGCAGAATGAAGAAGGATATGAGAAAAAGTGGAATGGGTAAGGCAGGAAAAAGAGGTTCCAAGGCAAAGGGTGGCAAGGCTCCAAAGGGCGGCAAAGGTCCAAAGGGCGGCAAGGCTCCCAAGGGTAACACACCAAAGGGAAAAGGATTTTCACAGGGCTCTGCAAAGAAGGGAAGAAAATAA 2559 0.4361 MGKAKAKGKHRLDKWYHLAKETGYRSRASFKLLQINGKFDFLSSARAVLDLCAAPGGWMQVAVKHVPKGNLVIGVDLAPIAPMIGATAIQEDITRPECKSRIKKIMNQNGCSTFDVILHDGSPNVGGAWAQEATSQNALVIDSVKLATQFLSPKGTFVTKVFRSQDYSAVVYCLKQLFEKVEVDKPIASRSESAEIYLVGLKYKAPAKIDPRLLDYKHLFQASAQPQAKVVDVLRDNKQKRHRDGYEDGITTLRKVSSAASFIWSDAPLEILGSVTSISFTDPADLKIKDNKLTTEEVKSLCEDLRVLGKQDFKHLLKWRIHIRKALSPSKKTEPASTAVVENENEVDEDDRLLNEMEELTNALDRKKKREKKILAKRRAKDKVRKATGMQMDAVEDYVDHELFSLASMKGKKDLVAVDTTDYEGGEGEGDDSENEENKGGSEHSSSDLDSDEERKRYDEQMEDLLEQAYERFVIKKEGTAKQRKRIKNSYDADSQLLEAVETDDIVQSNYDSDEDEGVQEANPLMVPLNDGAALTQEEITNTWFNQDVFAEAVEERDVEKDDSENEMDIDGPKEKMPVAINIKGSKSVSEKIKENKSAASAVMDRTQPQASKEMDYEVVPQPDTDSDDSSSDESDDDVETKAEILALASKMLRKRKREQILDDAYNKHMFHDEGLPKWFIDEERKHRQPEKPITKEEVAAMKAQFKAIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQPDISERSKSKQIDRLYKKAVPKRPQKEYVVAKKGVQVKTGKGKVLVDRRMKKDMRKSGMGKAGKRGSKAKGGKAPKGGKGPKGGKAPKGNTPKGKGFSQGSAKKGRK* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4229 852 Pfam Spb1 C-terminal domain 612 802 IPR012920 GO:0005634|GO:0006364|GO:0008168
Psa7g4229 852 MobiDBLite consensus disorder prediction 787 805 - -
Psa7g4229 852 MobiDBLite consensus disorder prediction 729 852 - -
Psa7g4229 852 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 5 812 - -
Psa7g4229 852 MobiDBLite consensus disorder prediction 555 642 - -
Psa7g4229 852 MobiDBLite consensus disorder prediction 734 774 - -
Psa7g4229 852 PANTHER RRNA METHYLTRANSFERASE-RELATED 5 812 - -
Psa7g4229 852 MobiDBLite consensus disorder prediction 621 640 - -
Psa7g4229 852 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 8 204 IPR015507 GO:0001510|GO:0008168
Psa7g4229 852 MobiDBLite consensus disorder prediction 423 463 - -
Psa7g4229 852 Pfam FtsJ-like methyltransferase 24 202 IPR002877 GO:0008168|GO:0032259
Psa7g4229 852 Coils Coil 340 377 - -
Psa7g4229 852 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 23 204 IPR029063 -
Psa7g4229 852 Pfam Domain of unknown function (DUF3381) 237 385 IPR024576 -
Psa7g4229 852 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 809 IPR028589 GO:0008649|GO:0031167
Psa7g4229 852 MobiDBLite consensus disorder prediction 435 463 - -
Psa7g4229 852 Gene3D Vaccinia Virus protein VP39 21 210 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4229 K14857 - gmx:100790741 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4229 7 343629123 343634379 Psa7g4229 7 343629123 343634379 ECH