Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4178 ATGGTAATTGACGAATATGAAACCCTAACCTACAACAAACTCTTCCAATCCGTCGAGCTTTACCTACATCCTGACATCGCTCAACACCTTAAGCGATTCAAAACCGTAATGCGACCTAAGGAGCATAATGTCTCCATCGTAATCGATCGCAACGAAGAAATCCTCCACAAGTTCAAAGGCGTTGATTTCAAATGGAGATTAATCATACAAGCGATTCCGCCAACGTACATTAGAAGATCTGGAGGAAGTAACGAACATCACACCATGGTGAAATCAAGTGTTCGTTGCTTTGAGGTAAGGTTTCATAAGAATCACAGAGACATGGCTTTATCTGAGTACTTTCCATTTGTAATGGAAAAAGCTAAAGAAGTTCAAGAGGAACAGAAGACACCGAAGCTTTTCACTCTCACGAACGATAGAGTGTTGAAAAGATTCGGAGATATGTGGCAATCTGTGGCTCTCGATCATCCTGCTACATTTGAGTCATTAGCGATGGATTCTGAGTTGAGGAATATGATACTTGATGATTTGGATCTCTTTCTGGAGCGTAAGGAGTTCTATAAGAGGGTTGGTGATGTTCTGCATAATGCCGAGCTTAGGAGTTTGTTGATGTCAACACGGAATCGTTCTATACTTGTTGTTGAGGATATTGATTGTACTCTTCAGCTTCATAACCGTCTTGCATTTAGAGTTCCTCCTTGGCTTGCTGATAAGCCTCCGGTGACTTTATCAGGAATCCTCAATCTCATTGATGGTTTATGGTCTAGCTGTGGGGAAGAGAGGATCATAGTGTTCACTACCAATCACATAGACAAATTGGACCCTGCTCTGCTGCGGCCAGGGCGCATGGATGTACACATCTCTTTGTCTTACTGCAGCCCGCGTGGGTTCAGAGAGCTGGCTTTGAATTACCTTATGATGAAAGAGCACCCACTTTTTGTTGAGGATGACAAGTTGCTGGAGAAGGCCAAGATCACTCCTGCAGAGGTGGGTGAGCATTTTTTACAGAATGAAGACCCTGAAACTGCAATAAGAAGCTTGGTTGAGCTTCTTGAAAAGATGGGACGAAATCATTGTGAAAATAAAGCTATCAAAGATGTCACCACTGATTCATTTAAAGCCTTTGGTTTTGAAACTGAAGGTTGA 1146 0.4241 MVIDEYETLTYNKLFQSVELYLHPDIAQHLKRFKTVMRPKEHNVSIVIDRNEEILHKFKGVDFKWRLIIQAIPPTYIRRSGGSNEHHTMVKSSVRCFEVRFHKNHRDMALSEYFPFVMEKAKEVQEEQKTPKLFTLTNDRVLKRFGDMWQSVALDHPATFESLAMDSELRNMILDDLDLFLERKEFYKRVGDVLHNAELRSLLMSTRNRSILVVEDIDCTLQLHNRLAFRVPPWLADKPPVTLSGILNLIDGLWSSCGEERIIVFTTNHIDKLDPALLRPGRMDVHISLSYCSPRGFRELALNYLMMKEHPLFVEDDKLLEKAKITPAEVGEHFLQNEDPETAIRSLVELLEKMGRNHCENKAIKDVTTDSFKAFGFETEG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4178 381 ProSitePatterns AAA-protein family signature. 261 279 IPR003960 GO:0005524|GO:0016887
Psa7g4178 381 Pfam ATPase family associated with various cellular activities (AAA) 209 290 IPR003959 GO:0005524|GO:0016887
Psa7g4178 381 Gene3D - 192 286 IPR027417 -
Psa7g4178 381 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 192 - -
Psa7g4178 381 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 193 366 - -
Psa7g4178 381 Pfam Domain associated at C-terminal with AAA 1 67 IPR025753 -
Psa7g4178 381 PANTHER BCS1 AAA-TYPE ATPASE 193 366 - -
Psa7g4178 381 PANTHER BCS1 AAA-TYPE ATPASE 1 192 - -
Psa7g4178 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 339 IPR027417 -
Psa7g4178 381 Gene3D - 287 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4178 Psa-Chr7 340224258 340226060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4178 199 360 Miscellaneous Gene Families AT5G53170 31.098 4.68e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4178 K08900 - gmx:100789716 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4178 7 340224258 340226060 Psa7g4178 7 340224258 340226060 ECH