Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4145 ATGGAAGTTAACTTCTGTTTCAACCACCACCACCGGGCCTTCCGATTAACCTCCCCCCTCTCCGTTTCCTCTCTTCGCACACAGTTCCTCGGTTGCAATCGCAGTCTCAGACCACCTCCATCTCCAGGTTCAGCTTCAGCTGTTTCTTTGATTCACTTCACTCTCAACAAGCGAAAGAAGAATCTCAACCAGGGACGTGCGGAATTTGCATTATCACCTCAAGGAAGTAATGTTGGGAACCAGGTTATTGATAGTCAGATTCTTGATTTTCCAGAATTTCAAAGGGATAATTCACTGAACGAAGTTGGGAAGTTAAATGATCACAATGGAAAGGACAATCATGTTTTTGAGGACCAAGAGGTCCACTGTCAATTTTTGCAATCTTCCATGGTGCAGGAAACAGCCTTGAAGACTCAGACATTAGATTCATCTTCGTCTGTTCTTGACTCTAGTGTCAATGGTAACAGTTCCCATGTATTAGAGGAGCCTTTTTTATCTGTGGCTTTCAAATCTAGTCCATTGGAGCCTATAGCTTTTGCTGAGGAGATGACTCTACATGTGGAAGAAAATCAAGGTGTAGTTGACTCTAATCTCGAGTTGCCTTTGAGTATGGTCAAACCTGAGCACACTGCTTCTTCTGTTGGTTTAGATAACACGCTCGATACAATCAATGGCCATACTCATGAAAAAATTGAGCTTCATGCCATCAAAAGTGATGTCCTTTTTGGTGAATCTGTTAGGGAAGGGCTGTACATGTTTTATGAGGACAATAATTCTGCATCCGTTTCTGTTACACCCCTGAGTAGTAACAAGTCATTTTCTCCCAGTGCTTCTTCTGTGAATAGAACAAGACTGTCAGCAGCTATAAGAAATATCAGCCTGAACAGATTAGGATTATCGGCTGATGTTTCTCTACAAAATGCAGAGTACATTGATGAAGGCTACCCTCCGCAGCATAATAGTAACAATGTTTTGCCCCAGAGTTCCCACATCATGGTGCATATGGATCAGGAAAATGATCAAGTCAGGGTCCACGATAGTCAGAAAATTGATCCTTCAGAGCTTCTAAGAAAATATAATACCTTGCTAAAAGCTGGGAGGTTATGTGAATGTGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTATTAGATATGACTAAGGTTTATCATGCCAAGTTTTTTAACATCTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTATGTTAGGCTTATTCCAAATCCAATGCCGAGTACATTTAATATGCTCATGTCAGTGTGTGCAAGCTCCCAAGATTCTGAAGGGGCTTTCCAAGTTATGCAGCTTCTTAAGGATGCTCGACTAGATCCTGATTGCAAACTTTATACCAATTTGATATCAACTTGTGGCAAGAGTGGGAAGGTTGATCTAATGTTTGAGGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAATGTTCATACCTATGGGGCACTTATTGATGGTTGTGCTAGAGCTGGTCAAGTAGGTAAAGCATTTGGTGCTTATGGGATATTGAGGTCAAAGAATGTGAAGCCAGATCGCGTTGTTTTCAATGCACTTATAGCTGCATGTGCACAGTCCGGAGCAGTGTCTCGTGCCTTTGACGTGGTAGCAGAAATGGAAGCTGAAATACACCCTATTGAGCCAGACCATGTAACTTTTGGTACATTGATGAAGGCATGTGCAAAGGCTGGTCAGGTTGAACGAGCACATGAAGTTTATAAGATGATACAACAATATAATATAAAGGGATCTTCAGAAGTTTACACAATTGCAATTAATTCTTGTAGTCAAACTGGAGATTGGGAATTTGCACGTAGTGTATACAATGATATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTATGAGTGCACTAATAGATGTTGCTGGGCATGCTAAAAAGCTGGAGGCTGCCTTTGATATCCTACACCAAGCCCGGAAAGAAGGAGTACAGATTGGAATAATGACATATAGCTCGTTGATGGGTGCCTGTTGCAAGACAAGAGATTGGCAGAAAGCGTTGGAGCTTTATGAATATCTTAAATCTCTTAAATTGGTGCAAACAGTTTCAACTATTAATGCATTGCTCACTGCACTTTGTAATGGGGATCAATTCCAGAAGGCTTTGGAGGTTTTATCTGAAATGAAAGGATTAGGATTGCGCCCTAACAGTATCACATTCTCAATACTTATCGTGGCCAGTGAGAAGAGGGATGACATGGAAGCAGCTCAAATGCTCCTTTCGCAAGGCAAAAAGGATGGTGCAGCCCCTACTCTCATCATGTGTCGATGCATAATAGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCCTTGTTGGTGAACCTGTTTTATCTTTTGATTCAGGACGGCCACTAGTAAATAATGAATGGACATCACTGGCTTTATCGGTATATCGTGAAACAATCGGAGCTGGTGAAAAATCTACAAGTGAAATATTGTCGCAAATTTTGGGATGCTTGAAACTCCCTTATGATACATATATGAAAAATAGACTTGTTGAGAACCTGGGAGTAAGCGCTGAATCCTCAACAAGTTCACACCTCTGTTCATTGATAGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCAATACTTGAGGAAGCTGCTTCATATGGAGTTGTTCCATCTGTATCATTTAAAGTGAATCCTATTGTTATCGATGTTAAAGAATTACATCCTTATACTGCTGAGGTATACCTCTTAACTGTTTTGAAAGGTCTCAAGCATCGACTAGCAGCAGGTGCAAAACTACCCAATTTAATCATTTTATTGCCGGTAGAAGAAGCAAAAGTTTTGTCTCCCAATGGGGAAAAGATTATTATACTTGCAGAAAGAGGTGGCCAAGCAGTTGCAGCGCTGTTCAGGAGGCTTCATATTCCTTACCAGGGTAGTGAGTCGAATGGGAAGCTTAGAATAAATAGTCCGGGCCTGACAAAATGGTATCAGCCAAAGCTTGAATCTCCAAAGTTCGGTTTACAAGGTGACTGGAGCTCATCCCAATCACGACTCGGCAAAAACATTAGCAATCAGCAGCGAAACATTCGAACTGGCAATCTATCTTTAGACTGA 3129 0.412 MEVNFCFNHHHRAFRLTSPLSVSSLRTQFLGCNRSLRPPPSPGSASAVSLIHFTLNKRKKNLNQGRAEFALSPQGSNVGNQVIDSQILDFPEFQRDNSLNEVGKLNDHNGKDNHVFEDQEVHCQFLQSSMVQETALKTQTLDSSSSVLDSSVNGNSSHVLEEPFLSVAFKSSPLEPIAFAEEMTLHVEENQGVVDSNLELPLSMVKPEHTASSVGLDNTLDTINGHTHEKIELHAIKSDVLFGESVREGLYMFYEDNNSASVSVTPLSSNKSFSPSASSVNRTRLSAAIRNISLNRLGLSADVSLQNAEYIDEGYPPQHNSNNVLPQSSHIMVHMDQENDQVRVHDSQKIDPSELLRKYNTLLKAGRLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVKEAFDYVRLIPNPMPSTFNMLMSVCASSQDSEGAFQVMQLLKDARLDPDCKLYTNLISTCGKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVGKAFGAYGILRSKNVKPDRVVFNALIAACAQSGAVSRAFDVVAEMEAEIHPIEPDHVTFGTLMKACAKAGQVERAHEVYKMIQQYNIKGSSEVYTIAINSCSQTGDWEFARSVYNDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILHQARKEGVQIGIMTYSSLMGACCKTRDWQKALELYEYLKSLKLVQTVSTINALLTALCNGDQFQKALEVLSEMKGLGLRPNSITFSILIVASEKRDDMEAAQMLLSQGKKDGAAPTLIMCRCIIGMCLRRFEKACLVGEPVLSFDSGRPLVNNEWTSLALSVYRETIGAGEKSTSEILSQILGCLKLPYDTYMKNRLVENLGVSAESSTSSHLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSFKVNPIVIDVKELHPYTAEVYLLTVLKGLKHRLAAGAKLPNLIILLPVEEAKVLSPNGEKIIILAERGGQAVAALFRRLHIPYQGSESNGKLRINSPGLTKWYQPKLESPKFGLQGDWSSSQSRLGKNISNQQRNIRTGNLSLD* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4145 1042 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 139 1042 - -
Psa7g4145 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Psa7g4145 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Psa7g4145 1042 Pfam Pentatricopeptide repeat domain 723 781 IPR002885 -
Psa7g4145 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 553 IPR002885 -
Psa7g4145 1042 Gene3D Tetratricopeptide repeat domain 354 553 IPR011990 GO:0005515
Psa7g4145 1042 Gene3D Tetratricopeptide repeat domain 642 796 IPR011990 GO:0005515
Psa7g4145 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Psa7g4145 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Psa7g4145 1042 Gene3D Tetratricopeptide repeat domain 554 641 IPR011990 GO:0005515
Psa7g4145 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Psa7g4145 1042 TIGRFAM PPR: pentatricopeptide repeat domain 703 735 IPR002885 -
Psa7g4145 1042 TIGRFAM PPR: pentatricopeptide repeat domain 456 489 IPR002885 -
Psa7g4145 1042 TIGRFAM PPR: pentatricopeptide repeat domain 598 631 IPR002885 -
Psa7g4145 1042 TIGRFAM PPR: pentatricopeptide repeat domain 421 454 IPR002885 -
Psa7g4145 1042 TIGRFAM PPR: pentatricopeptide repeat domain 668 698 IPR002885 -
Psa7g4145 1042 TIGRFAM PPR: pentatricopeptide repeat domain 490 523 IPR002885 -
Psa7g4145 1042 TIGRFAM PPR: pentatricopeptide repeat domain 562 593 IPR002885 -
Psa7g4145 1042 Pfam Pentacotripeptide-repeat region of PRORP 420 559 IPR033443 -
Psa7g4145 1042 Pfam Pentacotripeptide-repeat region of PRORP 568 710 IPR033443 -
Psa7g4145 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4145 366 784 Glycosyltransferase AT1G05670 24.122 1.39e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4145 - - gmx:100814164 1454.11