Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4126 ATGGCTACCATTAACGGGAACACCGATGCTGCTCAACTCATTGTTGCTCCTACAAAACACCCTCTTCCTCCTCCTAAGACCGTTGATTCTAAATCCGTTCTCAAAAGGTTGCAATCTGAATTGATGTCTTTGATGATGAGTGGTGAATCGGGTATATCTGCTTTTCCTGAGGAGGACAACATATTCTTGTGGAAAGGAACAATAAAAGGAAGCAATGACACAGTGTTTGAAAACACAGATTACAAGCTATCACTTTCTTTTCCAACTGATTATCCTTTTAAGCCTCCTAAAGTTAAGTTTGAAACAACCTGTTTCCATCCCAATGTTGATCTTAGTGGCAATATATGTTTGGACATTCTTCAGGACAAATGGTCCTCTGCCTATGATGTCAGAACAATTCTACTATCCATTCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCTCTAAATCCACAAGCTGCACAGCTTTGGAGCAATCAAGAAGATTACCGCAAGATGGTGGTCAAGTTATACAATTCTCCAAGTGCTACTGCTTAG 540 0.4019 MATINGNTDAAQLIVAPTKHPLPPPKTVDSKSVLKRLQSELMSLMMSGESGISAFPEEDNIFLWKGTIKGSNDTVFENTDYKLSLSFPTDYPFKPPKVKFETTCFHPNVDLSGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVVKLYNSPSATA* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4126 179 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
Psa7g4126 179 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 178 IPR000608 -
Psa7g4126 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 20 18 174 - -
Psa7g4126 179 Gene3D Ubiquitin Conjugating Enzyme 24 175 IPR016135 -
Psa7g4126 179 SMART ubc_7 35 177 - -
Psa7g4126 179 Pfam Ubiquitin-conjugating enzyme 36 169 IPR000608 -
Psa7g4126 179 SUPERFAMILY UBC-like 30 170 IPR016135 -
Psa7g4126 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 18 174 - -
Psa7g4126 179 CDD UBCc 35 168 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4126 Psa-Chr7 337170359 337172448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4126 34 141 Miscellaneous Gene Families AT3G17000 32.743 1.42e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4126 K06688 - gmx:100305664 285.804