Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4047 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCTTCATCTAGTCCCAAAACTCGTCCTAACAAGCGCTCTCGTCTTTCTTCTTCCACTTCTACCTCTTCTGCCACTGCTACAGCCACCGCAGCAACAACCGCCGTCGCTACCACTCCTATTCGTTCTGTCAACACTCGTACCCGCGCGTCCAGAAACAAAGAACCTTTACCATCTAAGAATCTTCCTCCTATGGATTCCAATAATGAGTCATCCTCGGCTTCACGGCGTGATCGTCGCGGCAAGAATTTGGAAAGGGATAACTCCGATAAGGGAAAGGAGAAGGAGCACGATGTTAGGATTAGGGAAAGGGATGCAGAAAGAGGGCTGGCTTTGAATATGGAAACCGGTGCAGGGGATGAGGATGATAACGACAGTGACAGTGGTGCTGGGCTGTTGCATCAGAATTTAACATCTGCCAGCAGTGCACTCCAAGGGCTTCTTAGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCGTCATCCGGGATGGGTTCGTCCTCTCATCAGAATGGGAGGTTGAAGAAGATCCTTTTTGGGCTACGGGCTGATGGGGAAGAAGGTCGGCAGGTTGAGGCTTTGACGCAGCTCTGTGAAATGCTTTCTATTGGGACTGAGGATTCACTTAGTACTTTCTCCGTTGATTCTTTTGTACCTGTCCTCGTTGGGTTGCTGAATCATGAGAGCAATCCTGATATCATGCTTCTGGCAGCAAGGGCGCTAACACATCTCTGTGATGTACTCCCTTCGTCTTGTGCAGCTGTAGTGCATTATGGAGCCGTTTCAATATTCTGTGCGAGGCTGCTCACTATCGAGTATATGGATTTGGCCGAGCAGTCCCTTCAAGCTCTAAAGAAGATATCTCAGGAGCACCCAACTGCCTGCCTGCGAGCTGGGGCTCTCATGGCCGTACTCTCTTATTTGGACTTCTTCTCAACTGGAGTTCAGCGTGTTGCCTTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTAATGGAGGCTGTTCCTCTTCTGACGAACCTCCTCCAGTACCATGATTCCAAGGTCCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTTCGGATAAATTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCTAACAGTAGTTCTGGAGGCGGACAAGCTTCTCTCAGTACGCCAACATATACCGGTTTAATCCGACTTCTTTCAACTTGTGCAAGCGGGTCCCCTCTTGGAGCTAAAACTTTGCTACTTCTTGGAATTAGTGGCATTCTTAAAGATATTCTCTCTGGTTCTGGAGTTTCTTCTAATACTTCTGTTTCTCCTGCATTAAGTAGGCCACCGGAGCAGATATTTGAGATTGTAAATCTGGCAAATGAGCTTCTCCCCCCATTGCCACAAGGGACTATTTCCCTCCCTATCAGCACCAACTTTGTGAAGGGGCCTGTTGTAAAAAAGTCACCTGCTGGTACTTCTGCCCAACAAGAAGACACAAATGGAAATCCTCCTGAGATATCAGCCCGTGAAAAGCTATTAAATGAACAGCCTGAGCTACTTAAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATATACCTGTTCGGCACAAATGTCTTTCAGCCATTGGAAAGTTGATGTATTTCAGCTCATCAGAGATGATCCAGTCTTTGTTAAGCATGACAAATATATCAAGTTTCTTAGCTGGAGTCTTGGCATCAAAAGATCCACATGTATTGACACCTGCCTTGCAAATTGCTGAAATTCTAATGGAAAAGCTGCCCGGGACATTCTCTAAGATGTTTATCAGAGAAGGTGTTGTCCATGCAGTGGACCTACTTATTTTGCCTGGAAATTCAACCAATGTTTCAACACAAGCGTCTACTGCAGAGAAGGATACTGATTCTATACCTGGAGCCTCATCTCGCGTTAGGCGTAATCGGCGACGCTCTGGCAACTCCAATCCTGATGGAAATCCTTTAGATGATATCAAGAGTCCTGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCTGCGAATATTCCAACAGTAAATTCTAGTATCCGGTTATCTGTTAGCGCAGCTGCAAAAACTTTTAAAGATCAGTACTTTCCTTCGGATCCTGGGGCTGTTGAAGTGGGCGTTACAGATGATCTTTTGCATCTGAGAAATCTTTGCATGAAGTTAAATGCCGGTGTTGATGACCAAAGGACTAATAGTAAGGGGAAATCAAAAACTTCTGGATTTGGTCTGGAGGAGTGTTTAACTGGTGTCATATCTGAAATGCTAAAGGAACTTGGCAAAGGAGACGGTGTATCGACTTTTGAATTTATTGGTAGCGGTGTTGTTGCAGCTTTGCTGAATTATTTATCTTGTGGGTATTTTTCTAAAGATAAACCCTCAGAAACCCACCTGCCTAAGCTTCGCAAACAAGCACTTGCAAGATTTAAGTTATTTATTACTGTTGCACTGCCTGACACTATTGACAATGGGGATGTAACTCCTATGACTGTCTTGGTTCAAAAGCTTCAAAATGCTTTGTCCTCGATGGAGCGTTTCCCTGTTTTGCTGAGTCAATCACCTAGGTCATCCAGTGGAAGTGCACGCCTTTCCTCTGGACTAAGTGCTTTATCCCAGCCCTTCAAATTGCGTCTTTGTCGAGCCCAGGGGGAAAAGTCACTTAAGGATTATTCAGGCAATGTTGTGTTGATTGATCCATTAGCTAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAGCGAAGTGAATCTGTTCAGAAGTCCAATGCACCTGCTGGGAATTCTGAATCTGGGACAAGTCCTGCAGGAGCTGGTGTTCCACCTCCTTCTACCTCTACTCCGTCCACCACCCGTCGTCATTCTACGAGATCGAGATCTTCTGCTAGTTTAGGGGATACCACCAGAAAAGAATTAACTCAAGATAAATCCTTGAGCTCATCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGCGGCAAGAGGACCTCAAACCAGAAATGCTGCACGCAGAAGAGCAGCTGTTGATAAGGATGTTCAAATGAAGCCTGCAAATGGGGATTCTACTTCTGAGGATGAAGATTTAGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTTATCGAAGATGATGATGATATTTCTGATGATGAAGATGATGACCACGAAGATATGCTGAGGGACGACTCACTTCCTGTTTGCTTACCTGACAAAGTACATGATGTGAAATTGGGTGATTCAGCTGAGGAGAGTACTGTTACTCCTGCAACTAACGATGGCCAGACTAATGCGGCTTCTGGTTCTAGTAGCAAAGTTGGTTCAGTCAGGGGATCAGACACTGCAGATTTTAGGAGTGGCTATTCTTCTAGCTCACGAGGTGCTATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGAATCAGGGGTGGCAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCGAAGTTAATATTCACTGCTGGTGGGAAACAACTCAGCAGGCAGCTGACTATTTATCAAGCTGTTCAAAGACAGCTTGTACAAGATGAAGACGATGATGAGAGGTTTGCTAGCAGTGACTTTGTGTCGAGTGATGGAAGCAGGATGTGGGGTGATATTTTCATAATAAATTATGAGAAGGCAGATAGTCAAACAGATAGGGCTACCCCTGGTGGCCCAAGTTCTAACACTCCGAAATCTAGTAAATCTGGGTCAGTATCAAATTGCAGTGCTGAAGTCAAGTTGCATCAGACATCTGTAATTGATAGTATCTTGCAGGGGGAATTGCCGTGTGAGCTGGAGAAATCTAATCCCACATATGATATATTGGCTCTATTGCGTGTGCTGGAAGGTTTAAACCAGCTCGCACCTCGTTTGAGGGCCCAAGTAGCTACCGATAGCTTTGCTGAGGGAAAAATCTTGGATCTAGATGAGCTAGTTGTTGCCACAGGTTCTAAGGTTCCTCCGGATGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAGATACAAGATGCCCTTGCCCTATGTAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTAACTAAAGCTTGCCCTTTTTTGTTTCCATTTGAGGTCAGAAGACAGTACTTCTATTCAACTGCCTTTGGATTATCTCGTGCTTTGTATCGACTCCAGCAGCAGCAGGGTGCCGATGGCCATGGATCAACAAATGAAAGAGAGGTTAGGGTTGGAAGGCTGCAGCGCCAAAAGGTCCGTGTCTCTCGAAACCGCATTTTGGATTCTGCTGCTAAAGTGATGGAAATGTATTCTAGCCAGAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCCACCCTTGAGTTCTATACACTTCTAAGTCATGACTTACAAAAAGTTGGACTTCAGATGTGGAGATCGGGTTCTGATCAAATGGAAATTGATGGAGATGAAAAGAAAAAGAAAAGCAGTGAAGGCAATATTGCTAGAGACGGGGAACTTGTTCAAGCTCCTCTTGGGTTGTTTCCTCGTCCCTGGCCTGCAAATGCCGAGGCATCAGAAGGTAGCCAGCTTTTTAAAGTGATTGAATATTTCAGGCTTTTAGGCCGCGTAGTTGCTAAAGCACTTCAAGATGGACGTCTATTAGATTTGCCGTTATCTGTAGCCTTTTATAAGCTTGTTCTTGGTCAGGATCTTGATTTGCATGACATTCTTTACATTGATGCTGAACTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTTTGCCGGAAACATAATATAGAATCTATTGGTGGTGGTTATACTGGTACAGTAGCAAATTTGCATTACCGTGGAGCTCCAGTTGCAGATCTTTGTTTGGATTTTACCCTTCCTGGTTATCCAGATTACACTTTGAAACCTGGGGATGAAATTGTCGACCTCAATAATCTAGAGGATTATATATCCATGGTTGTTGATGCCACTGTCAAGACTGGAATAACACGGCAACTGGAAGCCTTTAGAGCCGGGTTCAATCAGGTTTTTGACGTCTCATCTTTGCAAATATTTACGCCTCATGAATTGGATTATTTACTTTGTGGCCGTCGAGAATTGTGGAAGACAGAGACACTAGCTGATCATATAAAATTTGACCATGGGTATACAGCCAAGAGCCCTGCAATAGTGAATTTGCTTGAAATCATGGGAGGGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCTAAGCTACCACCTGGTGGATTGGCTGTTCTAAATCCAAAATTAACGATTGTGAGAAAGCTCTCATCAACTGCAGCTAATACTGCATCCAATGGGAATGGACCTTCAGAAACAGCAGATGATGACTTGCCAAGTGTGATGACATGTGCAAATTACCTTAAGCTTCCTCCATATTCTACCAAGGAAATTATGCACAAGAAGCTAATGTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5679 0.4471 METRSRKRAEASSAAPSSSSSSPKTRPNKRSRLSSSTSTSSATATATAATTAVATTPIRSVNTRTRASRNKEPLPSKNLPPMDSNNESSSASRRDRRGKNLERDNSDKGKEKEHDVRIRERDAERGLALNMETGAGDEDDNDSDSGAGLLHQNLTSASSALQGLLRKLGAGLDDLLPSSGMGSSSHQNGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNTSVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPISTNFVKGPVVKKSPAGTSAQQEDTNGNPPEISAREKLLNEQPELLKQFGMDLLPVLIQIYGSSVNIPVRHKCLSAIGKLMYFSSSEMIQSLLSMTNISSFLAGVLASKDPHVLTPALQIAEILMEKLPGTFSKMFIREGVVHAVDLLILPGNSTNVSTQASTAEKDTDSIPGASSRVRRNRRRSGNSNPDGNPLDDIKSPVSVNVGSPPSSANIPTVNSSIRLSVSAAAKTFKDQYFPSDPGAVEVGVTDDLLHLRNLCMKLNAGVDDQRTNSKGKSKTSGFGLEECLTGVISEMLKELGKGDGVSTFEFIGSGVVAALLNYLSCGYFSKDKPSETHLPKLRKQALARFKLFITVALPDTIDNGDVTPMTVLVQKLQNALSSMERFPVLLSQSPRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLKDYSGNVVLIDPLASLAAIEEFLWPRIQRSESVQKSNAPAGNSESGTSPAGAGVPPPSTSTPSTTRRHSTRSRSSASLGDTTRKELTQDKSLSSSKGKGKAVLKPAQEAARGPQTRNAARRRAAVDKDVQMKPANGDSTSEDEDLDISPVEIDEALVIEDDDDISDDEDDDHEDMLRDDSLPVCLPDKVHDVKLGDSAEESTVTPATNDGQTNAASGSSSKVGSVRGSDTADFRSGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSNDPPKLIFTAGGKQLSRQLTIYQAVQRQLVQDEDDDERFASSDFVSSDGSRMWGDIFIINYEKADSQTDRATPGGPSSNTPKSSKSGSVSNCSAEVKLHQTSVIDSILQGELPCELEKSNPTYDILALLRVLEGLNQLAPRLRAQVATDSFAEGKILDLDELVVATGSKVPPDEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEVRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSDQMEIDGDEKKKKSSEGNIARDGELVQAPLGLFPRPWPANAEASEGSQLFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILYIDAELGKTLQELNALVCRKHNIESIGGGYTGTVANLHYRGAPVADLCLDFTLPGYPDYTLKPGDEIVDLNNLEDYISMVVDATVKTGITRQLEAFRAGFNQVFDVSSLQIFTPHELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGGFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTASNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS* 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4047 1892 SUPERFAMILY ARM repeat 191 658 IPR016024 -
Psa7g4047 1892 MobiDBLite consensus disorder prediction 10 69 - -
Psa7g4047 1892 CDD HECTc 1474 1887 IPR000569 GO:0004842
Psa7g4047 1892 ProSiteProfiles HECT domain profile. 1592 1892 IPR000569 GO:0004842
Psa7g4047 1892 MobiDBLite consensus disorder prediction 1130 1163 - -
Psa7g4047 1892 SUPERFAMILY Hect, E3 ligase catalytic domain 1466 1885 IPR035983 GO:0004842
Psa7g4047 1892 Gene3D - 181 498 IPR011989 -
Psa7g4047 1892 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 70 1892 IPR045322 GO:0006511|GO:0061630
Psa7g4047 1892 SMART hect_3 1485 1892 IPR000569 GO:0004842
Psa7g4047 1892 MobiDBLite consensus disorder prediction 1134 1163 - -
Psa7g4047 1892 Pfam HECT-domain (ubiquitin-transferase) 1522 1892 IPR000569 GO:0004842
Psa7g4047 1892 MobiDBLite consensus disorder prediction 1277 1303 - -
Psa7g4047 1892 Gene3D Hect, E3 ligase catalytic domains 1414 1654 - -
Psa7g4047 1892 MobiDBLite consensus disorder prediction 966 1016 - -
Psa7g4047 1892 MobiDBLite consensus disorder prediction 664 719 - -
Psa7g4047 1892 MobiDBLite consensus disorder prediction 966 1082 - -
Psa7g4047 1892 MobiDBLite consensus disorder prediction 1 128 - -
Psa7g4047 1892 MobiDBLite consensus disorder prediction 89 127 - -
Psa7g4047 1892 Gene3D - 542 669 IPR011989 -
Psa7g4047 1892 Gene3D Hect, E3 ligase catalytic domain 1764 1890 - -
Psa7g4047 1892 SMART arm_5 348 386 IPR000225 GO:0005515
Psa7g4047 1892 SMART arm_5 305 345 IPR000225 GO:0005515
Psa7g4047 1892 SMART arm_5 222 263 IPR000225 GO:0005515
Psa7g4047 1892 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 70 1892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4047 Psa-Chr7 333187249 333198024 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4047 K10590 - gmx:100783336 3003.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4047 7 333187249 333198024 Psa7g4047 7 333187249 333198024 ECH