Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4038 ATGGCGGAAGAACACGAAACTGAGACTGAAACTGAGCTTGAAACTGAGCTTGAAGAAGAGTTCTCCGTTTGGAAGAGGAACACTCCTCTTTTATACGATTTGTTCATTTCCCATCCTCTCTCATGGCCTTCCCTCACTGTTCAGTGGATTCCCACTTCTCCTCAACCCCACTCTCACCCTTCCTTTAACACCCACAAACTCCTCATAGCCACTCACACTTCCAACGAAGAATCCAACTACCTCATGGTCGCAGAATCAACACTCCCCGTAAACCCATCTCAACCCATCTTTTCCGATGACCCTGAAAACCCCTTTCTTCCGAAGGTAGAGATTACTCAAAGGGTTCTGGTTGATGGTGAGGTGAATCGGGCGCGTTCTATGCCGCAAAACCCTAGCATTGTTGCTGCAAAGACTTGTAATTCCGAGGTTTATGTGTTTGATTTTGCCAAGAAACGAGGAGATAATAATGATCCTGATTTCAGGTTGAAGGGTCATGACGAAGAAGGTTATGGTTTGTCTTGGAGTCCTTTTAAGAAAGGGTACCTTTTGAGTGGCTCTAATGACCATAAGATTTGCTTGTGGGATGTATTTTCTGAATCTCAGAACAATGTGCTTGATGCTTTTCAGGTTTACGAGGGCCATGGAAGTATTGTTGAAGATGTGTCTTGGCACACAAAGGATGAGAATTTATTTGGGTCAGGTGGAGATGACTGCAAGTTGATAATTTGGGATTTGAGGACAAACAAAGCACAACAATCACTCAAACCCCATGAAAGGGAGGTGAACTTTGTTTCTTTCAATCCGTATAACGAATGGATTTTGGCTACAGCATCTTCAGACACCACTGTTGGTCTCTTTGATATAAGGAAGCTTGAGGCGCCATTGCATTTTCTAAGTAGCCACACAGATGAAGTGTTCCAGGTAGAGTGGGATCCTAACCACGATGGAATTTTGGCATCTTCTAGTTCTGACAGAAGGCTGATGGTTTGGGATCTTAACAGAATTGGCGATGAGATGATTGAGGGAGACGAAGAGGGTGGTCCTCCTGAACTACTCTTCTCTCATGGGGGTCATAAAGGAAAAATATCAGATTTTTCATGGAACCAACACCAGCCATGGGTAATCTCAAGTGTAGCTGAGGATAATTCTTTCCATGTCTGGCAAATGGCTGAAAGCATTTACAATGATGGCGATGTCGATGACGATAACAGTTGGATGGGTAGTGACCAGCACTAA 1236 0.4401 MAEEHETETETELETELEEEFSVWKRNTPLLYDLFISHPLSWPSLTVQWIPTSPQPHSHPSFNTHKLLIATHTSNEESNYLMVAESTLPVNPSQPIFSDDPENPFLPKVEITQRVLVDGEVNRARSMPQNPSIVAAKTCNSEVYVFDFAKKRGDNNDPDFRLKGHDEEGYGLSWSPFKKGYLLSGSNDHKICLWDVFSESQNNVLDAFQVYEGHGSIVEDVSWHTKDENLFGSGGDDCKLIIWDLRTNKAQQSLKPHEREVNFVSFNPYNEWILATASSDTTVGLFDIRKLEAPLHFLSSHTDEVFQVEWDPNHDGILASSSSDRRLMVWDLNRIGDEMIEGDEEGGPPELLFSHGGHKGKISDFSWNQHQPWVISSVAEDNSFHVWQMAESIYNDGDVDDDNSWMGSDQH* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4038 411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 333 - -
Psa7g4038 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 204 IPR001680 GO:0005515
Psa7g4038 411 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 19 89 IPR022052 -
Psa7g4038 411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 196 - -
Psa7g4038 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Psa7g4038 411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 249 - -
Psa7g4038 411 SMART WD40_4 348 388 IPR001680 GO:0005515
Psa7g4038 411 SMART WD40_4 247 287 IPR001680 GO:0005515
Psa7g4038 411 SMART WD40_4 291 331 IPR001680 GO:0005515
Psa7g4038 411 SMART WD40_4 204 244 IPR001680 GO:0005515
Psa7g4038 411 SMART WD40_4 155 195 IPR001680 GO:0005515
Psa7g4038 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 289 IPR001680 GO:0005515
Psa7g4038 411 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Psa7g4038 411 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Psa7g4038 411 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Psa7g4038 411 SUPERFAMILY WD40 repeat-like 121 389 IPR036322 GO:0005515
Psa7g4038 411 PANTHER WD40 REPEAT FAMILY 8 401 - -
Psa7g4038 411 Pfam WD domain, G-beta repeat 163 195 IPR001680 GO:0005515
Psa7g4038 411 Pfam WD domain, G-beta repeat 293 331 IPR001680 GO:0005515
Psa7g4038 411 Pfam WD domain, G-beta repeat 250 287 IPR001680 GO:0005515
Psa7g4038 411 Pfam WD domain, G-beta repeat 352 387 IPR001680 GO:0005515
Psa7g4038 411 Pfam WD domain, G-beta repeat 209 244 IPR001680 GO:0005515
Psa7g4038 411 Gene3D - 1 407 IPR015943 GO:0005515
Psa7g4038 411 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 8 401 - -
Psa7g4038 411 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Psa7g4038 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 333 IPR001680 GO:0005515
Psa7g4038 411 ProSitePatterns Trp-Asp (WD) repeats signature. 182 196 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4038 Psa-Chr7 332589125 332591811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4038 182 389 Miscellaneous Gene Families AT5G08390 26.442 5.49e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4038 K10752 - gmx:100791834 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4038 7 332589125 332591811 Psa7g4038 7 332589125 332591811 ECH