Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4015 ATGCCAATGCCATCATCATTCCCAACTCGCAACTTTAAGCGCTTCAAACCCACCGATCTGTGCATCGTCAAACCCATTCTCTCTTCCCGAACCAATCTCTCCGAAGCCGTTTCATCTCTTGACCTTTTGCACCCCAAAGGCATTCGCTTACCCTCCAACGTTCTCGTCACTCTCTTGCGCCGTTGCTCCGACACCAAGTCTTACCGTGAGGGTAAGCTTGTTCACCTTCATTTGAAGCTTACAGGTTTTAAACGCCCCACCACTCTTATTGCTAACCATTTGATTCATATGTACTTCTGTTGCGGGGATTATGTTCATGCACGCAAGGTGTTTGATAAAATGGAGGTTAGAAATTTGTATTCTTGGAATAATATGCTTTCTGGGTATGTTAAATTGGGGATGATGAAACAAGCTAGGAGTATGTTTTATCAAATGTCTGACAAGGATTATGTGTCCTGGAACACTATGGTGGTCGGTTATGCACACTGTGGGAGATTTAGTGAGGCTTTGAGGTTTTATGGACAGTTGAGGAGATTGTGTATTGGTTATAATGAGTTTACGTTTGCCAGTGTATTGATTGTTTGTGTGAAATTGAAAGAATTTGAACTTTGTAGGCAGATTCATGGGCAGGTTTTTGTTGTTGGGTTTTTATGCAATGTGGTTGTTTCCAGCTCAATTGTAGATGCTTATGCAAAATGTGGTAAAATGGAAGATGCAAGGAGATTGTTTGATGAAATGTCCGCGAGGGATATTCCTGCCTGGACGACGTTAGTTTCAGGGTATGCTTTATGCGGGGATATGGAATCAGCTGCTGAAATGTTCAGTCAGATGCCTAAGAAAAAATCATATTCATGGACGTCTTTGATAGGCGGTTATGCAAGAAATGGTATGGGTCATAAAGCTCTTGGAGTGTTTAGAAAGATGATCGAGCAAAAAGTTAGGCCTGATGAATTTACTTTCAGTAATTGCCTGTTTGCCTGTGCTACTATTGCTTCACTGAAGTATGGTAAACAAGTACATGCATTTTTAGTGCGTAATAACATCCGACCTAATCCTGTTGTTGTAAGTGCTATTGTTGACATGTATGCAAAGTGTGGGAGAATGGAGACTGCCTGGCGAGTCTTTAATTTCAACGGAAATATGCAAGATGTAGTGTTGTGGAACACCATGATATCAGCACTAGCTTACTATGCATATGGTAATGACGCAGTTATGATGTTCAATGATATGCTGAAATCAGGAGTGAAGCCAAATAGGACCACCTTTATTGCAATTCTAAATGCATGTAGTCACTCTGGCCTTGTTCATGAAGGGCTTCAGATTTTCAAGTCCATGAATAACGAGCATGGTGTTGACCCTGACCTAGAACACTATGCACACCTAATTGATCTTTTTGGTCGAGCTGGGTGTTTTAATGAGTTGATGAAGGATTTATTCATGATGGATTGTAAACCAGGGGACCATGTTTGGTATTCTTTGCTTGGTGTATGTAGGTTGAATGGAAGTATACGACTTGGCAGAGAAGTAACTGAATTCCTTATTAAATGGCAGCCTCAATCTTCCGCCGCTTATGCAGTACTTTCTAGTATATATGTTGCACTTCTGAAATGGGGATTGGCTGAGGAAGTAAGACATATTATGAATGAGAGACGCATGAGGAAAGATCTATCCATTAGTTGGGTTGAAATTGAAAATGAGGTCCATGCTTTCACAAATGGATTGCATCCTTTGAAGGAAACATTGTACTCAGCTTTGGGGCACTTAAATAACCAGATAGAAGACAATGCCTTACACCTAACTGAAAGATAG 1809 0.4085 MPMPSSFPTRNFKRFKPTDLCIVKPILSSRTNLSEAVSSLDLLHPKGIRLPSNVLVTLLRRCSDTKSYREGKLVHLHLKLTGFKRPTTLIANHLIHMYFCCGDYVHARKVFDKMEVRNLYSWNNMLSGYVKLGMMKQARSMFYQMSDKDYVSWNTMVVGYAHCGRFSEALRFYGQLRRLCIGYNEFTFASVLIVCVKLKEFELCRQIHGQVFVVGFLCNVVVSSSIVDAYAKCGKMEDARRLFDEMSARDIPAWTTLVSGYALCGDMESAAEMFSQMPKKKSYSWTSLIGGYARNGMGHKALGVFRKMIEQKVRPDEFTFSNCLFACATIASLKYGKQVHAFLVRNNIRPNPVVVSAIVDMYAKCGRMETAWRVFNFNGNMQDVVLWNTMISALAYYAYGNDAVMMFNDMLKSGVKPNRTTFIAILNACSHSGLVHEGLQIFKSMNNEHGVDPDLEHYAHLIDLFGRAGCFNELMKDLFMMDCKPGDHVWYSLLGVCRLNGSIRLGREVTEFLIKWQPQSSAAYAVLSSIYVALLKWGLAEEVRHIMNERRMRKDLSISWVEIENEVHAFTNGLHPLKETLYSALGHLNNQIEDNALHLTER* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4015 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 120 150 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 421 454 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 92 119 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 253 280 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 151 179 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 225 252 IPR002885 -
Psa7g4015 602 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Psa7g4015 602 Pfam PPR repeat family 282 328 IPR002885 -
Psa7g4015 602 Pfam PPR repeat family 383 430 IPR002885 -
Psa7g4015 602 Gene3D Tetratricopeptide repeat domain 376 569 IPR011990 GO:0005515
Psa7g4015 602 Gene3D Tetratricopeptide repeat domain 26 179 IPR011990 GO:0005515
Psa7g4015 602 Gene3D Tetratricopeptide repeat domain 194 338 IPR011990 GO:0005515
Psa7g4015 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Psa7g4015 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Psa7g4015 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 279 - -
Psa7g4015 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 149 572 - -
Psa7g4015 602 SUPERFAMILY TPR-like 97 277 IPR011990 GO:0005515
Psa7g4015 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Psa7g4015 602 Pfam PPR repeat 120 148 IPR002885 -
Psa7g4015 602 Pfam PPR repeat 151 179 IPR002885 -
Psa7g4015 602 Pfam PPR repeat 253 280 IPR002885 -
Psa7g4015 602 Pfam PPR repeat 224 250 IPR002885 -
Psa7g4015 602 Pfam PPR repeat 354 376 IPR002885 -
Psa7g4015 602 Pfam PPR repeat 92 118 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4015 Psa-Chr7 331110081 331113147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4015 133 593 Glycoside Hydrolase AT3G49170 30.968 1.22e-78 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4015 - - lja:Lj3g3v3500060.1 868.996