Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4001 ATGGCTAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTATGCAACCTGCCTCATGGGACTGATGATAATATGTTGGCTGAATATTTTGGTACCATTGGAGTAATAAAGAAAGATAAACGTACAGGAAGACCTAAAATATGGTTATATCGAGACAAAGAGACCAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCGCATGCTGCCGTGGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATGCAATTGGAGTTTATATAGCTGAGTCAAAAAACAAGGATGACCAAACTTATAGTTCAATAGCAGATCCGGTTGTTGCTGGTGATGTTGTTGGACCAGAAGAAACTGAAAGTGACGTTAATGGTGTTAATGGAGGAGGTATAGGTCAAATTGATGCTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGCTCCAATGTGAATTTTGCTTTTCGTGGTGCGTGTAATCGCTGTGGAAGTGCACGCCCTGCTGGTGCTTCTGGCGTTGCAGGAGGAGGTGGCCGTGGCAGGGGACGTTCTGGGCAAGATTCAGGGGGTATTGGCCGTCCAGCTGGTGCAACTGCAGGACTATTTGGTCCCAATGACTGGTCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACAAATAAGCCTGGCCACAACGAGGGTGGTGTAAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGCAGGCTGAAGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAATCTGAAACTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGATCTAGGGATTCACAGAGATGCTACAGAAAAAAGCAGAGACAGGGGAAGGGATCGTGATGATGGAGAGCAGAGAAGCAGAGAGCCAATCGAGAAGGAGAGACAAAGCAGTCGGAATAGAGAGAGGGACAGAGGAAGAGATCGAGACAGGGATTATGGGCGAGATCGGGACCGGAGTAGACACCGATATTAA 1143 0.4628 MASIPGKFAPSNGSIYVCNLPHGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNAIGVYIAESKNKDDQTYSSIADPVVAGDVVGPEETESDVNGVNGGGIGQIDASSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGQDSGGIGRPAGATAGLFGPNDWSCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSETARVLPGSGRAGWEVEDLGIHRDATEKSRDRGRDRDDGEQRSREPIEKERQSSRNRERDRGRDRDRDYGRDRDRSRHRY* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4001 380 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Psa7g4001 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Psa7g4001 380 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Psa7g4001 380 Pfam Zn-finger in Ran binding protein and others 218 244 IPR001876 -
Psa7g4001 380 SMART rrm1_1 14 95 IPR000504 GO:0003723
Psa7g4001 380 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 378 - -
Psa7g4001 380 CDD RRM_SARFH 15 97 - -
Psa7g4001 380 SUPERFAMILY Ran binding protein zinc finger-like 144 181 IPR036443 -
Psa7g4001 380 Coils Coil 259 279 - -
Psa7g4001 380 MobiDBLite consensus disorder prediction 256 298 - -
Psa7g4001 380 SUPERFAMILY Ran binding protein zinc finger-like 210 245 IPR036443 -
Psa7g4001 380 MobiDBLite consensus disorder prediction 316 380 - -
Psa7g4001 380 MobiDBLite consensus disorder prediction 249 380 - -
Psa7g4001 380 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Psa7g4001 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Psa7g4001 380 ProSitePatterns Zinc finger RanBP2-type signature. 219 238 IPR001876 -
Psa7g4001 380 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 378 - -
Psa7g4001 380 SMART zf_4 151 177 IPR001876 -
Psa7g4001 380 SMART zf_4 217 241 IPR001876 -
Psa7g4001 380 MobiDBLite consensus disorder prediction 182 202 - -
Psa7g4001 380 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Psa7g4001 380 Gene3D - 12 95 IPR012677 -
Psa7g4001 380 Gene3D - 214 245 - -
Psa7g4001 380 Gene3D - 145 182 - -
Psa7g4001 380 ProSiteProfiles Zinc finger RanBP2 type profile. 215 244 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4001 Psa-Chr7 330598536 330605728 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4001 - - aip:107628735 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4001 7 330598536 330605728 Psa7g4001 7 330598536 330605728 ECH