Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3964 ATGGAAGAAGTTTGCGAAGGCAAAGACTTCGCTTTCCCAAAGCAAGAAGAAACCATTCTCGATTTCTGGTCCCGAATCGACGCATTCCACACACAGTTAGCTCTCACCAAAGACAAGCCCGAATACATCTTCTACGACGGTCCTCCTTTCGCCACCGGTCTTCCTCACTACGGCCACATTCTCGCCGGCACAATCAAAGACATCGTCACGCGCTACCAATCCATGACTGGACACCATGTCACGCGCCGATTTGGATGGGATTGTCACGGTCTTCCAGTTGAGAACGAGATCGATAAGAAGCTTGGGATTAAGAAGCGGGAGGATGTTCTTAAGCTTGGGATTGGGGTTTATAATGAAGAGTGTAGGAGTATTGTGACGCGGTATGTTTCTGAGTGGGAGAATGTTATTACTAGAACTGGGAGGTGGATTGATTTCAAGAATGATTATAAGACTATGGATCTTAAGTTTATGGAGTCTGTTTGGTGGGTTTTTTCTCAGCTTTATGCTAAAAACCTTGTTTATAAAGGTTTTAAGGTCATGCCATATAGTACTGGCTGCAAAACTCCACTCTCTAATTTTGAGGCTGGTCAGAATTATAAGGATGTATCTGACCCTGAAGTGTTCATGACGTTTCCGGTGTTGGGCGATCCACATGGTGCATCTTTTGTGGCTTGGACAACAACGCCATGGACTCTTCCTAGCAATCTTGCTCTGTGCATCAATGCTAATTTTACCTATTTGAAGGTACGCAATAAGTATACTGGTAAAGTTTATATAGTTGCCGAATCTCGTCTATCTGTACTCCATAACCCAAAGGAGAAGCCCAAAGAGGCTGTTGCTAATAGTTCAGTTAGTGTCCCTAAAAATGCAAAGAACAAGGGCACTTCAAGTGGCAAGGCTGATAATGTATTAGATTCTTTTGATGTGCTTGAGAAATTCACAGGAGCTTCATTAGTGGGGAAGAAGTATGAACCATTGTTTGATTACTTTAACGAGCTATCTGAAACAGCTTTTAGAGTTGTTGCCGACAATTATGTAACTGATGATAGTGGTACCGGTGTTGTCCACTGTGCCGCTGCTTTTGGTGAAGATGATTTTCGTGTTTGCATTGAGAATCAAATTATTAGTAAGGATAAACTTGTTGTAGCTGTTGATGATGATGGCTGCTTTACTGAAAAAATTACTGACTTTAGTGGGTGCTATATCAAACAAGCCGACAAGGATATCATTGAAGCAGTGAAGGCAAAGGGTAGGCTGTTTAAATCTGGAGCTTTTACACATTCCTATCCATTCTGTTGGAGATCTGATACCCCACTCATTTACAGAGCTGTTCCAAGCTGGTTTGTTAGAGTGGAGTTGCTGAAAGAGAAATTGTTGGAAAACAATAAACAGACTTACTGGGTTCCTGATTTTGTCAAGGATAAGCGATTTCACAATTGGCTGGAAAATGCAAGAGATTGGGCAATTAGTCGAAGTAGATTTTGGGGGACCCCTCTCCCTATATGGATTAGTGAGGATGAGAAAGAAATAGTTGTCATAGATTCTGTTGCAAAACTTGAAAAGCTTTCAGGTGTAAAGGTGTCTGACCTTCATCGGCACAACATTGATCATATTACAATTCAAAGTGAAAGTGGCCGTGTGCTTCGACGTGTTGATGATGTTTTTGACTGCTGGTTTGAAAGTGGGTCTATGCCTTATGCGTATATTCATTATCCTTTTGAAAATGTTGAGCTGTTTGAGAAGAACTTTCCTGGCCATTTTGTCGCTGAAGGGCTGGATCAAACCCGTGGTTGGTTTTATACCCTAATGGTGCTAGCTACTGCATTATTTGGTAAGCCTGCCTTTAGGAATCTAATTTGCAATGGGCTTGTCCTGGCGGAAGATGGAAAAAAGATGAGCAAAAGTCTGAAAAACTATCCTTCACCAATGGATGTTATTAATGATTATGGAGCGGATGCCTTGCGATTGTACCTTATAAACTCTCCTGTTGTGCGTGCTGAGCCACTTCGATTCAAGAAGGAAGGAGTTTATGGTGTTGTTAGAGATGTTTTCCTTCCCTGGTATAATGCATATAGGTTTCTTGTTCAAAATACAAAGAGGCTTGAGGTTGAGGGTCTAGCACCTTTTGTACTTCTTGATCATGCCACACTTCAGAAGTCATCAAATGTTCTTGATCAGTGGATCAACTCAGCCACACAAAGCCTTGTTCATTTTGTCCGGCAAGAAATGGATGGCTACCGCCTTTATACGGTGGTTCCGTACCTTCTAAAGTTTCTTGATAACCTTACAAATATATATGTACGGTTCAACCGTAAGAGACTGAAAGGTCGTACTGGAGAAGAAGACTGCAGGACAGCACTTTCAACTCTATACAATGTACTTTTGTTATCCTGTAAAGTGATGGCTCCTTTTACACCTTTCTTCACTGAGGTACTCTATCAAAATATGCGAAAAGCATCTAATGGATCAGAGGAGAGCATCCACTATTGCAGTTTTCCTGAGGAAGAAGGCAAGGGGGGAGAACGGATTGAGCAAAGTGTTTCAAGGATGATGACAATTATTGATCTGGCCCGAAACATTCGTGAGCGTCATAACAAGCCTCTTAAAACACCACTCAGGGAGATGGTCATAGTGCATCCTGATGCAGACTTCCTTGAAGACATTAATGGAAAGTTGAAGGAGTATGTACTTGAGGAACTCAATATACGATCCCTTGTTCCATGTAATGATACTTTAAAGTATGCATCCTTACGTGCCGAGCCTGACTTTAGTATTTTAGGTAAGCGACTAGGAAAATCTATGGGCATTGTTGCCAAAGAAGTCAAAGCAATGTCACAGGAAAAGATTTTGGCTTTTGAAAAGGCTGGAGAAGTCGTCATTGCAAGTCACCGTTTGAAGCTGTCTGATATTAAGGTTCTCCGTGATTTTAAACGTCCTGATGGTATGGCGGATAATGAGATTGATGCTGCTGGGGATGGTGATGTTTTAGTTATATTGGACTTGCGACCCGACGAGTCATTGTTTGAGGCTGGTGCTGCGAGAGAGGTTGTTAACAGAATCCAGAAGTTAAGAAAGAAAATTGCTCTTGAACCAACTGACACAGTGGAGGTTTACTTTCAATCATTGGATGATGATACATCAATCTCTCAGAGAGTTTTGCATTCACAGGAATCCTATATCAGAGAGGCTATTGGTTCTCCATTGCTTCAATTTTCTTTGATGCCTGCGCATGCAGTTATCATTGGTGAAGAGAGTTTCCATGGGATTTCCAGCATGTCGTTTGCTATCACCTTGGCAAGACCTGCGTTGATGTTCAATGAAAAAGCCATTCTTTCACTATTTTCAGGTGACTCAAAAGTTGCACACAATTTGCAAACTTACCTGCTATCAAGAGATCATTCAAATTTGAAGTCTGAGTTTCATGATGGAAATGGAAAGAAAACCGTAGACTCGATTGAACAGCAACCTGCGGCCGAAGTGGTACTTGGTGAGCATGTATTTCTCACTGTAGGGGATTACTATGTTGCTGCAAAATCTGTCTAA 3543 0.4169 MEEVCEGKDFAFPKQEETILDFWSRIDAFHTQLALTKDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVENEIDKKLGIKKREDVLKLGIGVYNEECRSIVTRYVSEWENVITRTGRWIDFKNDYKTMDLKFMESVWWVFSQLYAKNLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVFMTFPVLGDPHGASFVAWTTTPWTLPSNLALCINANFTYLKVRNKYTGKVYIVAESRLSVLHNPKEKPKEAVANSSVSVPKNAKNKGTSSGKADNVLDSFDVLEKFTGASLVGKKYEPLFDYFNELSETAFRVVADNYVTDDSGTGVVHCAAAFGEDDFRVCIENQIISKDKLVVAVDDDGCFTEKITDFSGCYIKQADKDIIEAVKAKGRLFKSGAFTHSYPFCWRSDTPLIYRAVPSWFVRVELLKEKLLENNKQTYWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPIWISEDEKEIVVIDSVAKLEKLSGVKVSDLHRHNIDHITIQSESGRVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLATALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMDVINDYGADALRLYLINSPVVRAEPLRFKKEGVYGVVRDVFLPWYNAYRFLVQNTKRLEVEGLAPFVLLDHATLQKSSNVLDQWINSATQSLVHFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLLSCKVMAPFTPFFTEVLYQNMRKASNGSEESIHYCSFPEEEGKGGERIEQSVSRMMTIIDLARNIRERHNKPLKTPLREMVIVHPDADFLEDINGKLKEYVLEELNIRSLVPCNDTLKYASLRAEPDFSILGKRLGKSMGIVAKEVKAMSQEKILAFEKAGEVVIASHRLKLSDIKVLRDFKRPDGMADNEIDAAGDGDVLVILDLRPDESLFEAGAAREVVNRIQKLRKKIALEPTDTVEVYFQSLDDDTSISQRVLHSQESYIREAIGSPLLQFSLMPAHAVIIGEESFHGISSMSFAITLARPALMFNEKAILSLFSGDSKVAHNLQTYLLSRDHSNLKSEFHDGNGKKTVDSIEQQPAAEVVLGEHVFLTVGDYYVAAKSV* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3964 1180 CDD Anticodon_Ia_Ile_ABEc 671 858 IPR033709 GO:0000049
Psa7g3964 1180 MobiDBLite consensus disorder prediction 272 297 - -
Psa7g3964 1180 Gene3D HUPs 395 668 IPR014729 -
Psa7g3964 1180 Gene3D HUPs 4 209 IPR014729 -
Psa7g3964 1180 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1109 IPR023586 GO:0004822
Psa7g3964 1180 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 429 IPR009008 GO:0002161|GO:0006418
Psa7g3964 1180 CDD IleRS_core 396 671 - -
Psa7g3964 1180 Pfam tRNA synthetases class I (I, L, M and V) 306 667 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa7g3964 1180 Pfam tRNA synthetases class I (I, L, M and V) 19 272 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa7g3964 1180 Pfam Anticodon-binding domain of tRNA ligase 725 874 IPR013155 GO:0004812|GO:0006418
Psa7g3964 1180 PANTHER BNAUNNG00270D PROTEIN 1 1109 - -
Psa7g3964 1180 SUPERFAMILY Nucleotidylyl transferase 11 681 - -
Psa7g3964 1180 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa7g3964 1180 Gene3D - 673 865 - -
Psa7g3964 1180 Hamap Isoleucine--tRNA ligase [ileS]. 2 1093 IPR023586 GO:0004822
Psa7g3964 1180 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 686 934 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa7g3964 1180 TIGRFAM ileS: isoleucine--tRNA ligase 10 881 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Psa7g3964 1180 Pfam Domain of unknown function (DUF5915) 894 1061 - -
Psa7g3964 1180 MobiDBLite consensus disorder prediction 282 297 - -
Psa7g3964 1180 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Psa7g3964 1180 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Psa7g3964 1180 PRINTS Isoleucyl-tRNA synthetase signature 550 563 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Psa7g3964 1180 PRINTS Isoleucyl-tRNA synthetase signature 590 599 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3964 Psa-Chr7 328242229 328258691 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3964 K01870 - gmx:100791830 2175.98