Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3603 ATGAACAACGAACGAAAAACGCGCGTGGCATTCACGATCGCCACTTTAGCAGCTGCGATAATCTCCATCATCTTCACCGTACGCCGCCGTACGAGGCGGAAGCAGCGCGTGTCTCTTTCGAATTCGTGTTTCTCACATTCCGAACCGAAGCCACAGTCAACATTTAAGCGAGTCTTAGCTGATAACTCCTACTCTCCGTTTAAGCATTTGAGCTTGAAAGCCTCCGGTAGTAGCGAGAATGGTTCAAATTTGCATCCGTTTGAGGCGGAGATTACGGCATTATTAAGTAATCACCAGCCTGAAATTGAACTTGGAGCTGAGAAATTAGAAATGAATGATTCATATGTTTGGGTCGATACAGAGATGCAGTTAAAGGAGCTGGTCAATGTATTGAGCAAGGAAAGGTTCTTTGGTGTGGATACAGAACAACATAGCCTGCACTCTTTTCTAGGCTTTACAGGATTAGTTCAGATTTCTACTCAACAGGAAGATTATTTGATTGATACTATTGCCCTGCATGATTCTATGGAAATTCTTCAGCCAGTTTTCGCTAACCCTTCAATTTGTAAAGTGTTCCATGGGGCCGATAATGATGTTCTTTGGCTACAGAGGGACTTTCACATATACATTGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGCTATCAAAACCACAAAAATCACTTGCTTATTTACTAGAAACTTACTGTGGTGTAATGACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGAAGAAATGGTACATTATGCACGAACAGATGCACACTATTTGTTGTATATTGCGAACTGTCTAATCGCTGAACTAAAACAACTGGACAATGATAACTCTTGTTCCGATGACAAATTCCATTTTGTTCTCGAGGCTAGTCGGCGTTCAAACATGACTTGCTTACAACTTTTCACAAAGGAGATTGAAGCTTCGCCCGGAGAATCTGCTGCATTATCATTATTTTCACGCCATCAGAGCAATCAAGGCTTTCCTTCAATTTCCAATGAAACCCAGTTTCTTTATACCGTGAGGCAGCTTTGCACATGGAGAGATTTGATGGCACGTATTCATGATGAAAGCATAAAATATGTACTATCAGACCAGGCAATTATTGCTTTGGCAAGTCAGCTTCCAGCAAGTAACTCTGAAATATACAACACCATAGTTCAGACTGATGTCAATGCAGAAACGGGTCTGAGCTCTTGCATCCCTTCCCCATCTCCTGTTGTTTGCAGCCACCTGAGTGATATCTCTCGTCTGCTTGCAAATGAGTTGGTTAACCATGGTGATATTTATTCTAAGTGTCTAGGTCAAAATGGAAGTTGTAAACTTAACATATTTAATTATGCTTTGTTGGTTAATAGTAACCCGAGACCGACCTTATTATCCTATAAGCACTCAAGCCTAAAAAATCCTCGACAACATTCACGGAAGGCTTCTCGAAATTCATTCGTTAAAAAATTCTCTTGCAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGACTGCTTTGTTACTGCGATCGGAAGAAGCTTGAATGGTACCTTAACCGTGATCTAGCAAAGCTTGTTGAGGAGGAACCCCCAGGTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGGCAATGATTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAGTCACTACTTACGATATCGAATAATCCCGTCATGTTACAGAATACATTTCCCTGAGCATTTGAAGAGTCATCGCTCTCATGATATTGTCCTACTTTGCGTGGATTGCCATGAAGTTGCCCATGCTGCTGCGGAGAAGTATAAAAGAAAAATAGCTTCCGAATATGGGATTCCTCTGTATGTTCGTAGAGTAATTCATCCAGGGCAAGAGACTGAAAAATCTAATGATGAGGGAGGTGTATCTCCATTACAATTACGATCAGCTGCTGTGGCTCTTCTACGTCACGGGCCAAGAATGCCTCTTGAGCGACGTGAAGAACTGACTGAGATTGTAAAGAAATATTATGGAGGAAGGGAGATATCTGAGGAGGATCTAGAAAGTGCTTTGCAAGTTGGCATGCGGCCTTATGAGAGAAGAAGATATGAGAAAAAGAGAGGGGTAACATTTAAACATTCCACAGGAAATGCTGTTGCAGTGCCACAAGGGGAAAATCATGCTGATCACGCAGCTGGAATTATTAGTAATGTGGACACATTGAATATTGATACTCTTGATGATTCATATGCAAATGAAGATACAGTAAGTGGAGATAACAGAGAAGATGATTTCGGAAAACCCTCTTTGACTTCTGATCTTGCCGTTGATAAAGCTACTTCAAATGGAAATACCATTTTAGTTAAAACTACAAATGACGATGACGATGATAATGACAATGATGATGAAACAAGTAACTCTGCTGTAAATGTTGATGAGAGTCTGAGCAAAAGCCAATCAAATGTTGCTGCAAAACACCATTCAAAACTATCGCTCTTGGGACATGGTCCACACGGGAAACACGTTGTAGATCATTTATTGAATGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATACTTTAAAACCGCGTTTTCTTCCTGGTGGATGGGACATAAAACACAGTGGAAAGAGGGATTTCGGCGAGTTCAGTGTATACAACCATCTCAAAGGAGCTGCTGCTGCTGCTAGTTTGGAGTGA 2772 0.4098 MNNERKTRVAFTIATLAAAIISIIFTVRRRTRRKQRVSLSNSCFSHSEPKPQSTFKRVLADNSYSPFKHLSLKASGSSENGSNLHPFEAEITALLSNHQPEIELGAEKLEMNDSYVWVDTEMQLKELVNVLSKERFFGVDTEQHSLHSFLGFTGLVQISTQQEDYLIDTIALHDSMEILQPVFANPSICKVFHGADNDVLWLQRDFHIYIVNLFDTSKACEVLSKPQKSLAYLLETYCGVMTNKLLQREDWRQRPLSEEMVHYARTDAHYLLYIANCLIAELKQLDNDNSCSDDKFHFVLEASRRSNMTCLQLFTKEIEASPGESAALSLFSRHQSNQGFPSISNETQFLYTVRQLCTWRDLMARIHDESIKYVLSDQAIIALASQLPASNSEIYNTIVQTDVNAETGLSSCIPSPSPVVCSHLSDISRLLANELVNHGDIYSKCLGQNGSCKLNIFNYALLVNSNPRPTLLSYKHSSLKNPRQHSRKASRNSFVKKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLNRDLAKLVEEEPPGIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGSHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIASEYGIPLYVRRVIHPGQETEKSNDEGGVSPLQLRSAAVALLRHGPRMPLERREELTEIVKKYYGGREISEEDLESALQVGMRPYERRRYEKKRGVTFKHSTGNAVAVPQGENHADHAAGIISNVDTLNIDTLDDSYANEDTVSGDNREDDFGKPSLTSDLAVDKATSNGNTILVKTTNDDDDDNDNDDETSNSAVNVDESLSKSQSNVAAKHHSKLSLLGHGPHGKHVVDHLLNEYGEDGIREFCQRWRQVFVDTLKPRFLPGGWDIKHSGKRDFGEFSVYNHLKGAAAAASLE* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3603 923 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 914 IPR045092 GO:0000175|GO:0000467
Psa7g3603 923 Gene3D - 25 320 IPR036397 GO:0003676
Psa7g3603 923 MobiDBLite consensus disorder prediction 801 836 - -
Psa7g3603 923 PANTHER PROTEIN RRP6-LIKE 3 2 914 - -
Psa7g3603 923 Gene3D HRDC domain 340 440 IPR044876 -
Psa7g3603 923 SUPERFAMILY Ribonuclease H-like 50 287 IPR012337 -
Psa7g3603 923 Pfam 3'-5' exonuclease 115 282 IPR002562 GO:0003676|GO:0006139|GO:0008408
Psa7g3603 923 Pfam HRDC domain 353 394 IPR002121 GO:0003676
Psa7g3603 923 SMART 35exoneu6 115 283 IPR002562 GO:0003676|GO:0006139|GO:0008408
Psa7g3603 923 MobiDBLite consensus disorder prediction 819 836 - -
Psa7g3603 923 SUPERFAMILY HRDC-like 347 400 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3603 Psa-Chr7 297140325 297146316 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3603 K12951 - gmx:100791485 1342.02