LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g3253	ATGGCTCAGCCGCTTGCGAAGAAAGACGATGACCGGGACGACGAAGCTGATTATTCACCCTTTATGGGAATTGAAAAGGGGGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAACTAGATGCTAGGAGATGTTCACAGGTTATCACAAAACTCTTATACCTACTGAATCAGGGAGAGACATTTACAAAGGTTGAAGCTACAGAAGTTTTCTTTTCGGTTACCAAGCTTTTCCAGTCTAGAGATCTGGGGTTGAGGAGAATGGTCTACCTAATTATAAAAGAACTCTCCCCATCTGCAGACGAGGTTATTATCGTCACGAGCTCCCTCATGAAGGACATGAATAGTAAAACTGATATGTACAGGGCAAATGCCATTCGCGTGCTTTGTCGCATCACGGATGGAACCCTCCTTACCCAAATTGAGCGGTATTTAAAACAAGCAATTGTAGACAAAAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGTGGTATTCATCTACTCCAGACAAATCCTGAAATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCCGTACAATCAAGAGCAGCTCTTGTACAATTCCATGCACTGGCTTTGCTACATCAGATACGTCAGAATGATCGACTGGCAGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAAGTGTCCGCTCCCCTTTGGCCCAATGTCTCTTGATCCGTTATACAAGTCAGGTTATTCGTGAGTCAGGAAATAATACACAATCAGGGGAACGCCCCTTCTATGATTTTCTTGAGAGTTGCCTTCGTCACAAGTCAGAAATGGTGATATTTGAAGCTGCTAAGGCAATTACAGACCTCAACGGTGTAACTACCCGCGAGTTAACTCCAGCAATTACTGTTCTTCAGCTCTTCCTAAGTTCTTCCAAGCCAGTTCTTAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCGACACTTGCTATTACTACTCTTTTGAAGACAGGCAATGAATCAAGTGTGGATCGCCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTGTGCTTGAAGTTTCCTTTAAAATATAGATCTCTGATGAATTTCCTGAGTAACATTCTTAGGGAGGAAGGTGGTTTCGATTACAAAAAAGCAATTGTTGATTCAATAGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTCTGTGAGTTCATTGAAGATTGTGAATTCACGTACTTGTCAACACAGATACTCCACTTCATTGGAATTGAAGGACCAAAAACATTGGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTAGGGCCAGTGCTGTGAGCACACTGGCCAAATTTGGTGCTTCTGTTGATGCATTAAAGCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTTCGCGATAGAGCCACACTTTATCTGAACACGCTTGGAGGTGATCTTGAGAATGATGAAGATGTGAGAGAGTTCCTCTTTGGGTCACTTGATACCCCACTTGTCAATCTGGAGTCTAGTTTGAAAAACTATGTGCCTTCGGAAGTGGCTTTTGACATTCGTTTGGTGCCCAAGGAGGTCAAGTCTCAGCCTCTTACAGAGAAGAAAGCTCAAGGTAAAAAGCCAACTGGATTGGGTGCTCCTCCTAGTGGCCCCCCATCCACAGTAGATTCGTATGAAAGGCAGCTCCTGTCAATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATACACATGTTGTGTTTCAGTACAACTGCACAAACACGATACCCGAACAACTTTTGGAAGATGTTTTTGTAATTGTGGATGCTTCAGAAGCAGAAGAATTTTCTCAGGTGTTCTCCAAGCCCGTCAGATCTCTTCCTTATGATTCACCTGGGCAGACTTTTGTGGCATTTGAGAAGCCCGAGGGATTACCAACAACTGGAAAGTTTTCTAACACTCTAAAATTTATTGTTAAAGAGGTTGACCCAACCTCTGGTGAGGCTGAAGATGATGGTGTTGAAGATGAATACCAGTTGGAAGATCTCGACGTTGTTGCAGCAGATTACATATTGAGAGTGGGGGTGTCTAATTTCAGGAACGCATGGGAAAGCATTGACCCTGACAGTGAACGAGTGGATGAGTATGGTCTTGGTCCAAGAGAAAGCTTGTCTGAAGCTGTAAATACTGTCATCAATCTTCTAGGCATGCAACCTTGTGAGGGCACAGAGGTAGTCCCCCCTAATTCAAGGTCACACACATGCTTATTGTCGGGTGTATTCATAGGGGGTGTGAAGGTGCTTGTGCGGTTGTCTTTTGGACTTGATGGTGCAAAGGATGTTGCAATGAAACTGTCTGTCCGATCCGATGATGTAAGTGTCAGCGATGCCATCCATGAGATTGTAGCAAGCGGCTAG	2655	0.4339	MAQPLAKKDDDRDDEADYSPFMGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESGNNTQSGERPFYDFLESCLRHKSEMVIFEAAKAITDLNGVTTRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFIGIEGPKTLDPSKYIRYIYNRVHLENATVRASAVSTLAKFGASVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDLENDEDVREFLFGSLDTPLVNLESSLKNYVPSEVAFDIRLVPKEVKSQPLTEKKAQGKKPTGLGAPPSGPPSTVDSYERQLLSIPEFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDTHVVFQYNCTNTIPEQLLEDVFVIVDASEAEEFSQVFSKPVRSLPYDSPGQTFVAFEKPEGLPTTGKFSNTLKFIVKEVDPTSGEAEDDGVEDEYQLEDLDVVAADYILRVGVSNFRNAWESIDPDSERVDEYGLGPRESLSEAVNTVINLLGMQPCEGTEVVPPNSRSHTCLLSGVFIGGVKVLVRLSFGLDGAKDVAMKLSVRSDDVSVSDAIHEIVASG*	885

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g3253	884	Pfam	Coatomer gamma subunit appendage platform subdomain	619	764	IPR013040	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126
	Psa7g3253	884	SUPERFAMILY	Clathrin adaptor appendage domain	614	768	IPR013041	-
	Psa7g3253	884	Gene3D	-	766	882	IPR012295	-
	Psa7g3253	884	Pfam	Adaptin N terminal region	29	540	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Psa7g3253	884	Pfam	Coatomer subunit gamma-1 C-terminal appendage platform	767	881	IPR032154	-
	Psa7g3253	884	SUPERFAMILY	Subdomain of clathrin and coatomer appendage domain	769	881	IPR009028	GO:0006886\|GO:0016192\|GO:0030117
	Psa7g3253	884	MobiDBLite	consensus disorder prediction	590	619	-	-
	Psa7g3253	884	PANTHER	COATOMER SUBUNIT GAMMA	1	884	-	-
	Psa7g3253	884	PIRSF	Gamma-COP	7	882	IPR017106	-
	Psa7g3253	884	Gene3D	-	23	316	IPR011989	-
	Psa7g3253	884	Gene3D	Coatomer, gamma subunit, appendage domain	614	765	IPR037067	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126
	Psa7g3253	884	PANTHER	COATOMER SUBUNIT GAMMA	1	884	IPR017106	-
	Psa7g3253	884	SUPERFAMILY	ARM repeat	30	567	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g3253	Psa-Chr7	245295878	245303314	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g3253	K17267		-	gmx:100789362	1592.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa7g3253	7	245295878	245303314	Psa7g3253	7	245295878	245303314	ECH