Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2394 ATGGAAGCACAGGCAGGAGCCAACCAGAGGATTGCAAGAATCTCTGCTCATCTCCACCCTTCAAATTTCCAGGAAGGAGGTGATGTTGCAATTAACAAGGCTAACTGCAGAGCAAAAGGTGGAGCACCTGGATTCAAAGTAGCAATCTTAGGGGCTGCTGGTGGAATTGGTCAACCCCTTTCTTTGTTGTTGAAGATGAATCCATTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACTCCTGGTGTCACTGCTGATGTTAGTCACATGGACACTGGTGCTGTGGTCCGTGGCTTTCTGGGGCAGCCACAACTTGAGAATGCACTCACAGGAATGGACTTGGTAGTTATACCTGCTGGTGTGCCGAGAAAACCTGGAATGACGAGGGACGATTTATTTAAGATAAATGCTGGAATTGTGAGGACTCTTTGTGAAGGAGTTGCCAAAAGCTGTCCCAATGCAATTGTCAACTTGATTAGCAATCCAGTGAATTCTACTGTGCCAATTGCTGCTGAGGTCTTCAAAAAAGCTGGTACATATGATCCAAAGCGACTTTTAGGAGTTACAACCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTAGGAGGTCACGCGGGAGTCACAATATTGCCTCTTTTGTCACAGGTTAAGCCCCCCAGTAGCTTCAGTGCAGAAGAAGCCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGCATATGCAGCTGCCAAGTTTGCTAACTCGTGCCTCCATGGCTTGAAAGGAGAAGCCGGGGTGGTGGAGTGTGCTTTTGTCGATTCTCAGGTTACGGATCTTCCTTTCTTTGCAACCAAGGTTCGTCTTGGTCGTGGTGGAGCAGAAGAGATATATCAACTCGGTCCCCTGAACGAGTATGAGAGGGCCGGGTTGGAAAAAGCGAAGACAGAGTTAGCAGGAAGCATCCAGAAGGGAGTAGAATTCATCAAAAAATAA 1071 0.4669 MEAQAGANQRIARISAHLHPSNFQEGGDVAINKANCRAKGGAPGFKVAILGAAGGIGQPLSLLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFSAEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLHGLKGEAGVVECAFVDSQVTDLPFFATKVRLGRGGAEEIYQLGPLNEYERAGLEKAKTELAGSIQKGVEFIKK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2394 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Psa7g2394 356 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 356 - -
Psa7g2394 356 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 46 355 IPR010097 GO:0006099|GO:0030060
Psa7g2394 356 CDD MDH_glyoxysomal_mitochondrial 45 354 IPR010097 GO:0006099|GO:0030060
Psa7g2394 356 Gene3D - 37 189 - -
Psa7g2394 356 Gene3D - 190 356 IPR015955 GO:0003824|GO:0016616
Psa7g2394 356 SUPERFAMILY LDH C-terminal domain-like 189 355 IPR015955 GO:0003824|GO:0016616
Psa7g2394 356 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Psa7g2394 356 ProSitePatterns Malate dehydrogenase active site signature. 189 201 IPR001252 GO:0006108|GO:0016615
Psa7g2394 356 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 2 356 - -
Psa7g2394 356 PIRSF Lac_mal_DH 44 354 IPR001557 GO:0016616|GO:0019752
Psa7g2394 356 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 354 IPR022383 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2394 Psa-Chr7 170027701 170030360 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2394 K00026 - gmx:100170735 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2394 7 170027701 170030360 Psa7g2394 7 170027701 170030360 ECH