Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1358 ATGCATCTAGAGCTTGATGCTTTCACTGCTTTGGTTATCATTCTGTGTTTTCTTGGATTGATTCTCAAGGAGACAGTGATGGGAGGTAATAGTTCAAAAGGCTCTCACAAGAGACATGTAACTTCACCATCTTCATCGTCAACGTATGGGTCTGTTGGTTCTTCATCTTCTTCGGATATTCATAACTATGGATATCCACAATCGTCATATCCATATCCACAACCGCAACATAAACCGTATCAAAGACCTAATCACCACCGTAATTCAGAAACTCCTTTGCATGATTATTCACGACCTAATAGGAAGTTAGATAGGAGGTATTCAAGGATTGCTGATGATTATCATTCTCTTGATGAGGTTACTGCTGCTCTTTCACATGCTGGCTTGGAATCGTCGAATCTAATTGTTGGCATTGATTTCACGAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATCACATTGGAAATGGTCAAAATCCTTATGAACAAGCAATTGCGATTATCGGGAAAACTTTAACCTCTTTTGACGAGGATAACATGATTCCATGTTTTGGATTTGGAGATGCATCAACACATGATCAAGACGTTTTCAGTTTCCATTCGGATGAGAGGTTCTGCAATGGATTTGAAGAAGTTTTATCAAAATATAGAGAGATTGTTCCATGCCTCCGACTCGCAGGACCAACCTCATTTGCCCCTATTATTGAAATGGCCATGACTATTGTTGAGAAAAGTGGTGGCCAATATCATGTCTTGCTTATAATAGCTGATGGACAGGTGACTAGAAGCGTTGACACAGAAAACGGCAAGCTAAGTTCACAGGAAAAGAAGACAATTGATGCAATAGTAAAAGCTAGCGAGTATCCACTATCGATAGTGTTGGTCGGAGTTGGAGATGGGCCATGGGATATGATGAGAGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACAACTTTCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAATGTGGATTCAAACCGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCATCTCAATATAAGGCAACCATAGATCACAACCTATTGGGGATACAGAGGGGACATTCGCCAGACAGGGTTCCGTTACCTCCACCTCAATATGATAGGGCTTCTTCTAGTAACGGTGCAGCATCTTTCCGTTCAAACAGTTTTCAGCAGCGGTCAAACAGTTTTCAGCAGAGTACACATACATATCCAAGCAACAACAATGAAACGAACACAGAACCGTCTTCATCTGGTTTATATGACAATAAGGTTTGCCCGATCTGTCTTACTAATGCGAAGGATATGGCCTTTGGCTGCGGGCATCAGACTTGTTGCGAATGTGGAGAAAGCCTTGAACTCTGCCCTATTTGCCGGAGTACAATCGATACCAGAATAAAGCTTTACTGA 1452 0.4125 MHLELDAFTALVIILCFLGLILKETVMGGNSSKGSHKRHVTSPSSSSTYGSVGSSSSSDIHNYGYPQSSYPYPQPQHKPYQRPNHHRNSETPLHDYSRPNRKLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGNGQNPYEQAIAIIGKTLTSFDEDNMIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSKYREIVPCLRLAGPTSFAPIIEMAMTIVEKSGGQYHVLLIIADGQVTRSVDTENGKLSSQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDSNRKETEFALAALMEIPSQYKATIDHNLLGIQRGHSPDRVPLPPPQYDRASSSNGAASFRSNSFQQRSNSFQQSTHTYPSNNNETNTEPSSSGLYDNKVCPICLTNAKDMAFGCGHQTCCECGESLELCPICRSTIDTRIKLY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1358 483 Pfam Copine 156 369 IPR010734 -
Psa7g1358 483 MobiDBLite consensus disorder prediction 76 102 - -
Psa7g1358 483 MobiDBLite consensus disorder prediction 29 58 - -
Psa7g1358 483 SUPERFAMILY vWA-like 132 315 IPR036465 -
Psa7g1358 483 PANTHER COPINE FAMILY PROTEIN 1 27 483 - -
Psa7g1358 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 483 IPR013083 -
Psa7g1358 483 MobiDBLite consensus disorder prediction 387 431 - -
Psa7g1358 483 Pfam Zinc finger, C3HC4 type (RING finger) 437 478 - -
Psa7g1358 483 SMART VWA_4 131 334 IPR002035 -
Psa7g1358 483 ProSiteProfiles Zinc finger RING-type profile. 440 473 IPR001841 -
Psa7g1358 483 PANTHER RING-FINGER PROTEIN 27 483 - -
Psa7g1358 483 SUPERFAMILY RING/U-box 434 479 - -
Psa7g1358 483 MobiDBLite consensus disorder prediction 83 102 - -
Psa7g1358 483 MobiDBLite consensus disorder prediction 386 431 - -
Psa7g1358 483 CDD RING-HC_RGLG_plant 439 483 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1358 Psa-Chr7 98962052 98965972 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1358 K16280 - gmx:100800161 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1358 7 98962052 98965972 Psa7g1358 7 98962052 98965972 ECH