Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1354 ATGTATCACAGTGTCGGTGCACGCCGCCTACTATACCGTTCTCAAATATCTTACTACGTTAAAGCTGGTCTCATTGACACTGCAATCCAACTGTTCGACCAAATGTCTCAATCAAATTGTCGTCCTTTCAGCATCGACTACAACCGTTTCATCGGCGTTCTCATTCGTCACTCTCACCTCGACCTCGCTCAAAGCTACTACCACCGCCACGTCATCCCTAATGGTTTCTCACTATCCCCTTTCACTTACTCTCGCTTCATCTCCGCTCTCTGTTCCGTCAAAAACTTCTCCCTCATTCACTCTCTCCTTCGTGATATGGATGCTCTCGGCTATGTTCCTGATATTTGGGCTTTTAATATCTACCTCAACATTCTCTGCCGCGAAAATCAGTTAGATATTGCTCTTCAATTGTTTCGTACCATGCCTTTGAAGGGAAGAGAGCCTGATGTTGTTTCGTATACCATTATCGTCGACGCATTGTGTAAAGCTAAAAGGTTTGATGAGGTTGCTCGTGTTTGGCGTGGTTTGATTGAGAGTGGGTTGAAGCCTGATTTGAAGGCATGTGCTGCACTTGTTGTTGGGTTGTGTAGTGTTGGTAATGTTGATTTAGCGTATGAGCTTGTTGTTGGTGTGATCAGTGGTGGTGTTAAGGTTAATTCTTTGGTTTATAATGCTTTGATTAGTGGGTTTTGCAGGATGGGTAGGATTGATAAGGCTTTGGCGATTAAAGGGTTTATGAGTAGGAATGGGTGTGTCCCGGATTTGGTTACTTATAATATTTTGTTGAATTATTGTTGTGATGAGATTATGCTTGACGAGGCGGTGAGGTTGGTGGAGACTATGGAGAGGAGTGGTGTGGGGCCTGATGTGTATAGTTATAATGAGTTGCTTAAGGGTTTTTGTAAGGCTAATCAGTTGGATAGGGCTTATTTGACTGTGGTCAAGAAGATGCAGAGTAATGGGGTATGTGATGTTGTTTCTTACAATACTATTATTGGGGCTTTTTGTAAGGCGCGTCGGACTGAAAGAGCTTACGAGTTGTTTGAGGAAATGCGTAGGAAAGGGATTCAACCAGACGTGATAACATTCACGGTGCTTATAGAAGCGTTTTTTAGGGAAGGTGCTTTCGATGTTGCCAAAAAGCTTCTTGATCGAATGACAGAAATGGGGATTATTCCTGACGTGATTTTCTATACCACAATATTTGATCATCTGTGCAAGTCCGGGAATATTGATAGGGCTCTTGTTGTTTTTTGTGACATGGTGGAGAGTGGAGTAAGTCCAGATGTGGTCTCATACAATGCACTCATAAATGGGTTTTGCAAGTCTTCTAGAGTTATGGACGCCATGCGGCTATATGAAGAAATGCAGGTTAAAGGATTATGCCCGGATGAGGTCACTTTCAAGTTGGTAGTTGGAGGGCTCATTAAGGAAAACAAGCATTCAGAGGCCTGCAGGGTTTGGGATCAGATGATGGAAAAAGGATTTACACTTGACAGACATCTCTCCGAGATTCTAGTCAATGCCATTCAGTCAAGAGATGGCACATGA 1551 0.4313 MYHSVGARRLLYRSQISYYVKAGLIDTAIQLFDQMSQSNCRPFSIDYNRFIGVLIRHSHLDLAQSYYHRHVIPNGFSLSPFTYSRFISALCSVKNFSLIHSLLRDMDALGYVPDIWAFNIYLNILCRENQLDIALQLFRTMPLKGREPDVVSYTIIVDALCKAKRFDEVARVWRGLIESGLKPDLKACAALVVGLCSVGNVDLAYELVVGVISGGVKVNSLVYNALISGFCRMGRIDKALAIKGFMSRNGCVPDLVTYNILLNYCCDEIMLDEAVRLVETMERSGVGPDVYSYNELLKGFCKANQLDRAYLTVVKKMQSNGVCDVVSYNTIIGAFCKARRTERAYELFEEMRRKGIQPDVITFTVLIEAFFREGAFDVAKKLLDRMTEMGIIPDVIFYTTIFDHLCKSGNIDRALVVFCDMVESGVSPDVVSYNALINGFCKSSRVMDAMRLYEEMQVKGLCPDEVTFKLVVGGLIKENKHSEACRVWDQMMEKGFTLDRHLSEILVNAIQSRDGT* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1354 516 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 515 - -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Psa7g1354 516 Gene3D Tetratricopeptide repeat domain 458 514 IPR011990 GO:0005515
Psa7g1354 516 Gene3D Tetratricopeptide repeat domain 388 457 IPR011990 GO:0005515
Psa7g1354 516 Gene3D Tetratricopeptide repeat domain 7 69 IPR011990 GO:0005515
Psa7g1354 516 Gene3D Tetratricopeptide repeat domain 310 387 IPR011990 GO:0005515
Psa7g1354 516 Gene3D Tetratricopeptide repeat domain 212 286 IPR011990 GO:0005515
Psa7g1354 516 Pfam PPR repeat 16 40 IPR002885 -
Psa7g1354 516 Pfam PPR repeat family 113 162 IPR002885 -
Psa7g1354 516 Pfam PPR repeat family 428 476 IPR002885 -
Psa7g1354 516 Pfam PPR repeat family 324 371 IPR002885 -
Psa7g1354 516 Pfam PPR repeat family 253 302 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Psa7g1354 516 Pfam PPR repeat 215 242 IPR002885 -
Psa7g1354 516 Pfam PPR repeat 389 422 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 151 184 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 431 465 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 361 395 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 398 430 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 291 323 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 16 42 IPR002885 -
Psa7g1354 516 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Psa7g1354 516 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 515 - -
Psa7g1354 516 Gene3D Tetratricopeptide repeat domain 70 211 IPR011990 GO:0005515
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 320 IPR002885 -
Psa7g1354 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1354 388 513 Glycosyltransferase AT1G05670 27.778 2.31e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1354 - - aprc:113872581 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1354 7 98913082 98914632 Psa7g1354 7 98913082 98914632 ECH