Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1055 ATGGATTCGAGTTCGGGGAATCAAGAATTCGATTATTTGTTCAAACTATTGATGATTGGGGATTCTGGTGTTGGCAAAAGTAGTCTTCTTCTCAGATTCACCTCCGATGATTTTGAAGATCTCTCCCCCACCATTGGTGTTGATTTTAAGGTCAAATATGTCTCCATGGAGGGTAAAAAACTCAAGCTTGCAATTTGGGATACTGCTGGTCAGGAGAGATTTAGAACACTCACTAGCTCTTACTACAGAGGGGCGCAAGGAATCATTATGGTTTATGACGTAACCCGGCGAGAAACATTTACAGATCTATCTGAAGTATGGGCAAAGGAAATAGAGCTTTATTCGACAAATCAAGACTGCATGAGGATGCTTGTTGGAAACAAAGTAGATAAGGAGGAGGATAGAGTTGTGACAAAGAAAGAAGGAATAAACTTTGCTAGGGAATATGGCTGCTTATTTATCGAATGCAGTGCTAAAACTCGAGTAAACGTGCAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTTGATACACCTAGCCTCTTAGCCGAGGGATCTAAGGGGGTAAAAAAGAACATTTTTAAGGACAACCTACCCAAGTCTGATGCATCCACAAGTGGCTGTTGCTGA 630 0.4111 MDSSSGNQEFDYLFKLLMIGDSGVGKSSLLLRFTSDDFEDLSPTIGVDFKVKYVSMEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTDLSEVWAKEIELYSTNQDCMRMLVGNKVDKEEDRVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDNLPKSDASTSGCC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1055 209 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Psa7g1055 209 PANTHER DRAB5-RELATED 1 209 - -
Psa7g1055 209 SMART rab_sub_5 14 178 - -
Psa7g1055 209 Gene3D - 6 209 IPR027417 -
Psa7g1055 209 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Psa7g1055 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 183 IPR027417 -
Psa7g1055 209 SMART ran_sub_2 19 205 - -
Psa7g1055 209 PRINTS Transforming protein P21 ras signature 14 35 - -
Psa7g1055 209 PRINTS Transforming protein P21 ras signature 36 52 - -
Psa7g1055 209 PRINTS Transforming protein P21 ras signature 54 76 - -
Psa7g1055 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Psa7g1055 209 PRINTS Transforming protein P21 ras signature 153 175 - -
Psa7g1055 209 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Psa7g1055 209 SMART ras_sub_4 11 178 - -
Psa7g1055 209 ProSiteProfiles small GTPase Ras family profile. 7 209 IPR001806 GO:0003924|GO:0005525
Psa7g1055 209 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 209 - -
Psa7g1055 209 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Psa7g1055 209 SMART arf_sub_2 1 179 - -
Psa7g1055 209 ProSiteProfiles small GTPase Arf family profile. 7 176 - -
Psa7g1055 209 CDD Rab18 14 175 - -
Psa7g1055 209 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1055 Psa-Chr7 78472023 78476284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1055 15 168 EF-hand Containing Proteins AT5G27540 25.625 5.10e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1055 K07910 - qsu:112009028 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1055 7 78472023 78476284 Psa5g1449 5 111818715 111822829 PCT