Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0700 ATGGATGTGTTATTGTTGTTACTGCCTCTATTGGTGTCTTTGTCTTTGCCAAGCTTGAATGTAGTCGAGAGCCGACAAACACCGGCTGTGGAACACTATGTTGAGTACTATGCTGTGAGCTGCAGAGCTTACAGTGCCTCGGTGACGGAGTTTGGAGCGGTTGGCGATGGACAAACTTCGAACACGCGAGCTTTTCAGACAGCCGTCGATCATCTGAGTCAGTACTCGTCTAACGGCGGGTCTCAACTTTATGTTCCACCAGGAAGGTGGTTGACTGGTAGCTTCAATCTCACCAGTCATTTCACTTTGTATCATCTGAGTCAGTACTCGTCTAACGGCGGGTCTCAACTTTATGTTCCACCAGGAAGGTGGTTGACTGGTAGCTTCAATCTCACCAGTCATTTCACTTTGTTCCTACACAAAGATGCTGTCATTCTCGCCTCTCAGGATGAAAGTGAGTGGCCGGTGATCGAGCCCTTACCGTCTTATGGTCGAGGGAGGGACACTCAAGGCGGAAGGTATAGCAGTCTAATTTTCGGAACCAACCTCACGGATGTAGTCATAACAGGGGACAATGGAACATTAGATGGACAAGGTGAAGTGTGGTGGCAAAAGTTTCATAAGGGGGAGCTTAGTTATACCAGGCCTTACCTGATTGAAATCATGCACTCAGATGATATTCAGATATCAAATCTCACTCTGGTTAATTCTCCGTCCTGGAATGTTCATCCTGTTTACAGCAGCAACATTGTTGTTCGAGGCATCACGATCCTCGCTCCTGTGAATTCACCAAATACAGATGGGATCAACCCTGACTCTTGCACGAACACGCGGATTGAGGACTGTTATATAGTGTCCGGGGATGACTGTGTGGCTGTAAAGAGTGGTTGGGATGAGTACGGTATAGCTTATGGAAAGCCGACTAAACAGCTGGTAATAAAAAGGCTCACTTGTATTTCTCCAACCAGTGCTGTGATTGCTTTAGGGAGTGAAATGTCGGGTGGTATTGAAGATGTAAAGGCTGAGGACATTCTGGCGATCAATTCCGAATCGGGAGTTCGGATCAAAACTGCTGTTGGAAGAGGAGGATATGTGAGGGACATATATGTTAGAAGGATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAGATTATGGCTCTCATGCCGATAACAACTATGATCCTAACGCGATTCCTGTGATTCAGAATATTAATTACCGCGATATGGTTGCTGAAAATGTGACTATGGCTGCAAAGTTGGAGGGTATATCTAATGCACCATTTACCGGAATCTGCATATCCAATGTAACCATTGGACTAGCAAAGAAGGCGAAAAAAGTGCCGTGGAATTGCACCGATATCGCCGGGATTTCAAGTGGCGTCACTCCTGTACCGTGTGGCCTGTTGCCAGACCAAGGAGTAGAGGATACTGCGGCATGCACCTTCCCAGAAGGAAGTTTGCCAATCGAAGATGATGTCGAGGTTCAAACATGTACTTATAGAATAAATTTGTGA 1524 0.4613 MDVLLLLLPLLVSLSLPSLNVVESRQTPAVEHYVEYYAVSCRAYSASVTEFGAVGDGQTSNTRAFQTAVDHLSQYSSNGGSQLYVPPGRWLTGSFNLTSHFTLYHLSQYSSNGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDESEWPVIEPLPSYGRGRDTQGGRYSSLIFGTNLTDVVITGDNGTLDGQGEVWWQKFHKGELSYTRPYLIEIMHSDDIQISNLTLVNSPSWNVHPVYSSNIVVRGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGKPTKQLVIKRLTCISPTSAVIALGSEMSGGIEDVKAEDILAINSESGVRIKTAVGRGGYVRDIYVRRMTMKTMKWAFWMTGDYGSHADNNYDPNAIPVIQNINYRDMVAENVTMAAKLEGISNAPFTGICISNVTIGLAKKAKKVPWNCTDIAGISSGVTPVPCGLLPDQGVEDTAACTFPEGSLPIEDDVEVQTCTYRINL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0700 507 SUPERFAMILY Pectin lyase-like 112 473 IPR011050 -
Psa7g0700 507 SUPERFAMILY Pectin lyase-like 38 104 IPR011050 -
Psa7g0700 507 Gene3D - 29 106 IPR012334 -
Psa7g0700 507 Gene3D - 107 460 IPR012334 -
Psa7g0700 507 Pfam Pectate lyase superfamily protein 47 103 IPR024535 -
Psa7g0700 507 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 10 104 - -
Psa7g0700 507 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 105 504 - -
Psa7g0700 507 PANTHER PECTIN LYASE-RELATED 105 504 - -
Psa7g0700 507 PANTHER PECTIN LYASE-RELATED 10 104 - -
Psa7g0700 507 Pfam Glycosyl hydrolases family 28 170 449 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0700 Psa-Chr7 47708138 47710013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0700 35 504 Glycoside Hydrolase AT4G23500 70.000 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0700 - - gmx:100785841 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0700 7 47708138 47710013 Psa7g0700 7 47708138 47710013 ECH