Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0557 ATGGGCTGTTCTTGCACAAAAACGCGAATTCAGCGTGAGGATCTTGCGATTCTTGCCGAACAAACTTACTTTAATATTTCAGAAATAGAAGCATTATATGATCTCTTCAAGAAATTAAGCAGCTCTATGGTTAATGATGGGCTAATTAGCAAAGAAGAGTTTCAGCTTGGCTTATTTGGAAGCAGCAAGAAATGGAACCTCTTTGGCGACAGGGTGTTCGATTTGTTTGACTCGAAAAATGATGGTATGATAGATTTTGGAGAGTTTGTTAAAGCTTTAAGCGTTTTCCACCCTGCAGCGCCGCAAGCACAAAAAGCAGCCTTTGCATTTCGATTATACGATATATGGCAAAGAGGCTTTATAGAACGAGACGAGGTAAGAGAGATGATATTGGCACTGCTAAGAGAGTCTGATTTAGTTCTTTCTCATGATATAATTGAGCTTATAATTGATAAGGCCATTAAAGAAGCTGATTTAAAAGGAGATGGAAGGATTGATAGAGAGGAGTGGGAAAGTTTTGTTGCTCAAAATCCATCCTTACTGAGGAACATGACAATTCCTTATTTGAAGGATTTGAATATGCAGTTTCCTGTTTTTTTTGAAATGATATATGAAGATAATGAAGATAACACAAGCAGCATTCCGTGA 648 0.375 MGCSCTKTRIQREDLAILAEQTYFNISEIEALYDLFKKLSSSMVNDGLISKEEFQLGLFGSSKKWNLFGDRVFDLFDSKNDGMIDFGEFVKALSVFHPAAPQAQKAAFAFRLYDIWQRGFIERDEVREMILALLRESDLVLSHDIIELIIDKAIKEADLKGDGRIDREEWESFVAQNPSLLRNMTIPYLKDLNMQFPVFFEMIYEDNEDNTSSIP* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0557 215 ProSiteProfiles EF-hand calcium-binding domain profile. 70 99 IPR002048 GO:0005509
Psa7g0557 215 Pfam EF hand 70 90 IPR002048 GO:0005509
Psa7g0557 215 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 200 - -
Psa7g0557 215 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Psa7g0557 215 PRINTS Recoverin family signature 10 24 - -
Psa7g0557 215 PRINTS Recoverin family signature 72 93 - -
Psa7g0557 215 PRINTS Recoverin family signature 119 137 - -
Psa7g0557 215 PRINTS Recoverin family signature 165 185 - -
Psa7g0557 215 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Psa7g0557 215 Pfam EF-hand domain pair 105 172 IPR002048 GO:0005509
Psa7g0557 215 PANTHER CALCINEURIN B 1 200 IPR045198 GO:0005509|GO:0019722|GO:0019900
Psa7g0557 215 Gene3D - 15 209 - -
Psa7g0557 215 SUPERFAMILY EF-hand 15 191 IPR011992 -
Psa7g0557 215 SMART efh_1 68 96 IPR002048 GO:0005509
Psa7g0557 215 SMART efh_1 149 177 IPR002048 GO:0005509
Psa7g0557 215 SMART efh_1 105 133 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0557 Psa-Chr7 37527215 37528438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0557 22 199 EF-hand Containing Proteins AT5G24270 60.674 9.64e-81 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0557 K06268 - gmx:100808628 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0557 7 37527215 37528438 Psa7g0557 7 37527215 37528438 ECH