Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0556 ATGTCCATGTCCATGAGTTGTTTTTGCATCACCAGAAGCCGATCAAAAGTTAAGCACGAACAATCTTCCATACTTGCTTTAGAGACATCATTTACTGTAAATGAGGTTGAGGCTTTATTTGACTTGTTTAAGAAACTAAGCAGTTCAATTATTGATGATGGCTGCATTCACAAGGAGGAGTTTCAACTTGCGCTTTTTAGAAATAGTAGCAAGCAGAATCTACTTGCAAGCAGGGTATTTGATATGTTTGATATTAAGTGTAATGGAGTTATCGAGTTCGGTGAATTCGTTCGCTCACTAAGCATCTTTCATCCAAGGGCATCCGATGACAAGAAGATAGAATTTGCGTTTAAATTGTTTGATCTTGGAAAGACCGGATACATTGAACATAGTGAGTTGAAGGAGATGGTGTTGGCTACTTTGAATGAATCAGAAGTTACCATCTCAGATGATATTGTCGAATCTATTGTGGAAAAGACAATGAAGGAGGTTGATTCAAAAGGAGACGGAAAGATTGATATGGAAGAGTGGAAAGAATACGCGGCAAAGAATCCTTCTCTTCTTAAGATCATGACTCTGCAATATCTAAAGGATATAACTATGGCATTTCCAAGCTTTGTTTTGCACACCGAGGTGGAAGACTGA 645 0.3814 MSMSMSCFCITRSRSKVKHEQSSILALETSFTVNEVEALFDLFKKLSSSIIDDGCIHKEEFQLALFRNSSKQNLLASRVFDMFDIKCNGVIEFGEFVRSLSIFHPRASDDKKIEFAFKLFDLGKTGYIEHSELKEMVLATLNESEVTISDDIVESIVEKTMKEVDSKGDGKIDMEEWKEYAAKNPSLLKIMTLQYLKDITMAFPSFVLHTEVED* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0556 214 CDD EFh 112 179 IPR002048 GO:0005509
Psa7g0556 214 PRINTS Recoverin family signature 17 31 - -
Psa7g0556 214 PRINTS Recoverin family signature 79 100 - -
Psa7g0556 214 PRINTS Recoverin family signature 126 144 - -
Psa7g0556 214 PRINTS Recoverin family signature 172 192 - -
Psa7g0556 214 Gene3D - 22 214 - -
Psa7g0556 214 Pfam EF-hand domain pair 111 179 IPR002048 GO:0005509
Psa7g0556 214 Pfam EF-hand domain pair 53 98 IPR002048 GO:0005509
Psa7g0556 214 PANTHER CALCINEURIN B 5 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Psa7g0556 214 SMART efh_1 156 184 IPR002048 GO:0005509
Psa7g0556 214 SMART efh_1 112 140 IPR002048 GO:0005509
Psa7g0556 214 SMART efh_1 75 103 IPR002048 GO:0005509
Psa7g0556 214 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Psa7g0556 214 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Psa7g0556 214 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Psa7g0556 214 SUPERFAMILY EF-hand 25 207 IPR011992 -
Psa7g0556 214 PANTHER CALCINEURIN B-LIKE PROTEIN 8 5 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0556 Psa-Chr7 37525414 37526675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0556 5 214 EF-hand Containing Proteins AT4G17615 55.238 3.81e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0556 K06268 - nnu:104604792 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0556 7 37525414 37526675 Psa7g0556 7 37525414 37526675 ECH