LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g0129	ATGGCGGCTCCACCACACCGTTCCTCCAAAACTGAATCCTACACCGACAACAAACGCAAAGATGACGTCCGTCAATCCAACATCATCGCTGCACGTTCCGTCGCCAACGCCGTTCGCACCAGTCTCGGTCCCAAAGGTATGGACAAAATGATTTCCACCTCTTCCAATGAGGTTATCATCACCAACGACGGCGCCACCATTCTCCACAAGATGCAGGTTCTCCAACCAGCCGCTAAGATGCTCGTCGAACTCTCCAAATCTCAAGACTCCGCCGCTGGTGACGGTACCACCACTGTCGTCGTCATCGCCGGCGCACTTCTCGAAAAATGTCTTCTCCTTCTCTCTCATGGAATCCATCCTACCGTGATCTCCGATGCGCTTCATAAAGCTTCCGTCAAGGCTGTTGATATCCTCACTGCCATGGCAGTCCCGGTCGAACTCTCCGACCGTGAATCGCTTGTCAAATCCGCTAGCACTTCGCTTAACAGCAAGGTTGTTAGTCAATACTCTTCCCTCCTCGCTCCAATCGCCGTCGACTCGGTTCTCTCCGTTGTGGACTCGGATAAACCTAACATGGTTGATCTCCGTGATGTCAAGATCGTGAAGAAACTAGGTGGGACTGTGGATGATACTGAGCTTGTGAAGGGTTTGGTGTTTGATAAGAAAGTTAGCCATGCTGCTGGTGGACCTACCCGTATGGAGAATGCTAAGATTGCTGTGATTCAGTTTCAGATTTCGCCTCCAAAGACTGATATTGAACAGAGTATTGTGGTGAGTGAATATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTATATTTTGGGTATGATTAAGAAGATTAAAGCAACTGGTTGTAATGCGTTGTTGATTCAGAAGAGTATTTTGAGAGATGCTGTTACTGATTTGTCTCTACATTACCTTGCGAAAGCTAAGATTTTGGTGATTAAAGATGTTGAACGCGACGAGATTGAGTTCATTACCAAGACTCTTAATTGTTTGCCTATTGCTAATATTGAGCATTTTCGTGTTGAGAAGTTGGGTTATGCTGATCTTGTGGAGGAACTTTCTCTTGGGGATGGGAAGATTGTGAAGATTTCGGGGATTAAGGATATGGGGAAGACCACAACCGTGCTTGTACGTGGATCCAATGCGCTTGTGCTTGATGAGGCGGAAAGGAGTCTGCACGATGCTCTGTGTGTTGTTAGGTGTTTGGTTGCGAAGAGGTTTTTGATAGCTGGTGGTGGTGCGCCGGAGATAGAGTTGTCTAGGCAATTGGGTGCTTGGGCGAAGGTGTTGCATGGAATGGAGGGTTACTGCATTCGGGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTTTGGCTGAGAATGCTGGTTTGAATCCGATTGCGATTGTTACTGAGCTGAGGAATCGTCATGCGCAGGGTGAGATAAATGCTGGAATCAATGTGAGGAAAGGTCAAATTACAAATATCCTTGAAGAGAATGTGGTGCAGCCACTGCTTGTAAGCACAAGCGCTATAACCTTGGCAACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTCACTGTGAGGTAG	1593	0.4696	MAAPPHRSSKTESYTDNKRKDDVRQSNIIAARSVANAVRTSLGPKGMDKMISTSSNEVIITNDGATILHKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDALHKASVKAVDILTAMAVPVELSDRESLVKSASTSLNSKVVSQYSSLLAPIAVDSVLSVVDSDKPNMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSEYSQMDRILKEERSYILGMIKKIKATGCNALLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRVEKLGYADLVEELSLGDGKIVKISGIKDMGKTTTVLVRGSNALVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR*	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g0129	530	ProSitePatterns	Chaperonins TCP-1 signature 3.	88	96	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Psa7g0129	530	SUPERFAMILY	GroEL equatorial domain-like	16	528	IPR027413	-
	Psa7g0129	530	TIGRFAM	chap_CCT_delta: T-complex protein 1, delta subunit	16	529	IPR012717	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Psa7g0129	530	Gene3D	-	144	410	IPR027410	-
	Psa7g0129	530	ProSitePatterns	Chaperonins TCP-1 signature 1.	39	51	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Psa7g0129	530	Gene3D	-	31	527	IPR027413	-
	Psa7g0129	530	PANTHER	CHAPERONIN	11	528	IPR017998	GO:0140662
	Psa7g0129	530	Pfam	TCP-1/cpn60 chaperonin family	34	528	IPR002423	GO:0005524
	Psa7g0129	530	CDD	TCP1_delta	15	529	IPR012717	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Psa7g0129	530	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	36	52	IPR017998	GO:0140662
	Psa7g0129	530	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	58	76	IPR017998	GO:0140662
	Psa7g0129	530	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	88	107	IPR017998	GO:0140662
	Psa7g0129	530	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	378	400	IPR017998	GO:0140662
	Psa7g0129	530	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	412	424	IPR017998	GO:0140662
	Psa7g0129	530	PANTHER	T-COMPLEX PROTEIN 1 SUBUNIT DELTA	11	528	-	-
	Psa7g0129	530	SUPERFAMILY	GroEL-intermediate domain like	147	408	IPR027410	-
	Psa7g0129	530	MobiDBLite	consensus disorder prediction	1	22	-	-
	Psa7g0129	530	Gene3D	GroEL	215	374	IPR027409	-
	Psa7g0129	530	SUPERFAMILY	GroEL apical domain-like	210	383	IPR027409	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g0129	Psa-Chr7	9092663	9095309	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g0129	198	424	EF-hand Containing Proteins	AT3G14270	24.898	2.07e-07	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g0129	K09496		-	gmx:100786888	951.044

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa7g0129	7	9092663	9095309	Psa7g0129	7	9092663	9095309	ECH