Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0088 ATGGCTGAGGGTCTCGTTCTCCGCGGCACCATGCGTTCTCACACTGACATGGTTACCGCCATTGCTACCCCGATCGACAATTCCGATATGATTGTCACCGCCTCCCGCGACAAATCTATCATCCTCTGGCGCCTTACCAAGGAGGACAAGACTTACGATGTGTCCTCTTCATCCGACGGTCAGTTTGCTCTATCCGGTTCATGGGATGGTGAACTCCGTCTTTGGGATCTCAACGCCGGAACCTCCGCCCGCCGTTTCGTCGGTCACACCAAGGATGTTCTATCTGTGGCTTTCTCGATTGACAACCGTCAGATCGTGTCTGCTTCTCGTGACCGCACGATTAAGCTGTGGAACACTCTCGGTGAGTGCAAATACACTATCCAGGACGGTGATGCTCATTCTGATTGGGTTAGCTGTGTTCGTTTCAGCCCAAGCACGCTGCAGCCTACTATTGTCTCTGCTTCATGGGATAAAACTGTGAAGGTTTGGAATCTGACCAACTGCAAGCTGAGAAACACTCTTGCTGGACACTCTGGATATGTCAACACTGTTGCGGTGTCCCCTGATGGTTCTCTCTGTGCCAGTGGTGGCAAAGATGGTGTTATTCTCTTGTGGGATTTGGCTGAGGGAAAGAGACTTTACTCTCTTGATGCTGGTTCTATTATCCATGCTTTGTGCTTTAGTCCTAACAGGTACTGGCTATGTGCTGCAACTGAGTCTAGCATTAAGATCTGGGATTTGGAGAGCAAGAGCATTGTTGAGGATTTGAAGATTGACTTAAAGTCTGAAGCTGATGCTACCACCGGTGGTAACACTACCAAGAAGAAGGACATTTACTGTACTAGTTTGAACTGGAGTGCTGATGGAAGCACTTTGTTTAGTGGATATACCGATGGTGTTGTTAGAGTCTGGGGCATTGGTCGTTATTAG 930 0.4882 MAEGLVLRGTMRSHTDMVTAIATPIDNSDMIVTASRDKSIILWRLTKEDKTYDVSSSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDKTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKIDLKSEADATTGGNTTKKKDIYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 167 - -
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 173 IPR001680 GO:0005515
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 86 118 IPR001680 GO:0005515
Psa7g0088 309 PANTHER BNAA06G12310D PROTEIN 1 309 - -
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 85 IPR001680 GO:0005515
Psa7g0088 309 PRINTS G protein beta WD-40 repeat signature 105 119 IPR020472 -
Psa7g0088 309 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Psa7g0088 309 PRINTS G protein beta WD-40 repeat signature 193 207 IPR020472 -
Psa7g0088 309 SUPERFAMILY WD40 repeat-like 7 306 IPR036322 GO:0005515
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 309 - -
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 211 - -
Psa7g0088 309 ProSitePatterns Trp-Asp (WD) repeats signature. 63 77 IPR019775 -
Psa7g0088 309 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 309 IPR045223 GO:0015935|GO:0043022
Psa7g0088 309 SMART WD40_4 79 118 IPR001680 GO:0005515
Psa7g0088 309 SMART WD40_4 4 44 IPR001680 GO:0005515
Psa7g0088 309 SMART WD40_4 167 206 IPR001680 GO:0005515
Psa7g0088 309 SMART WD40_4 120 164 IPR001680 GO:0005515
Psa7g0088 309 SMART WD40_4 261 305 IPR001680 GO:0005515
Psa7g0088 309 SMART WD40_4 45 76 IPR001680 GO:0005515
Psa7g0088 309 SMART WD40_4 209 246 IPR001680 GO:0005515
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 309 IPR001680 GO:0005515
Psa7g0088 309 Gene3D - 4 309 IPR015943 GO:0005515
Psa7g0088 309 ProSitePatterns Trp-Asp (WD) repeats signature. 151 165 IPR019775 -
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Psa7g0088 309 Pfam WD domain, G-beta repeat 131 164 IPR001680 GO:0005515
Psa7g0088 309 Pfam WD domain, G-beta repeat 172 206 IPR001680 GO:0005515
Psa7g0088 309 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Psa7g0088 309 Pfam WD domain, G-beta repeat 84 118 IPR001680 GO:0005515
Psa7g0088 309 Pfam WD domain, G-beta repeat 277 304 IPR001680 GO:0005515
Psa7g0088 309 Pfam WD domain, G-beta repeat 220 246 IPR001680 GO:0005515
Psa7g0088 309 Pfam WD domain, G-beta repeat 53 76 IPR001680 GO:0005515
Psa7g0088 309 CDD WD40 7 304 - -
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 86 118 - -
Psa7g0088 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Psa7g0088 309 ProSitePatterns Trp-Asp (WD) repeats signature. 193 207 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0088 Psa-Chr7 6575749 6577680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0088 125 306 Miscellaneous Gene Families AT5G08390 27.174 9.89e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0088 K14753 - gmx:100778205 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0088 7 6575749 6577680 Psa7g0088 7 6575749 6577680 ECH