Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0052 ATGGGCGATGCAATGTATGATGAAGAGTGTGATTATCTGTTCAAAGCAGTTCTAACTGGTGATTCTGGAGTGGGAAAATCAAATCTGTTATCAAGATTTGCGAAAGATGAATTCAGGTTGGATTCAAAACCAACCATAGGAGTTGAATTTGCTTACAGAAATATCAGAGTTAGAGATAAATTCATCAAAGCTCAAATATGGGACACTGCAGGCCAAGAAAGGTTCAAAGCTATCACAAGTTCATATTATAGAGGAGCCTTGGGAGCATTGCTAGTGTACGACATAACAAGGCGATCGAGTTTTGAGAATGTGAGAGCATGGTTAGTGGAGCTAAGAGAATTTGGCGGGGAAGACATGGTGGTTATTCTGGTTGGAAACAAGAGTGATCTAGTTGAATCAAGAGAAGTTGAGGAAAAAGAAGGGAAAGAGTTTGCAGAGAAAGAAGGGCTGTGTTTTATGGAAACTTCTGCTTTGAAGAATCTCAATGTGGAGCAAGTGTTCTTACAAATGATCACAAAGATATTTGAAATCACAAGCCAGAGAAGTTTGGAAGCCAAAATGAATGCAAAACCACTTAAGCTTTTGAATGGGAGAGAGATTTACTTAGCTGATGAAGTCACTGCAACTAAACAGGCTCCTTGTTGTTCTTGA 651 0.3917 MGDAMYDEECDYLFKAVLTGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIRVRDKFIKAQIWDTAGQERFKAITSSYYRGALGALLVYDITRRSSFENVRAWLVELREFGGEDMVVILVGNKSDLVESREVEEKEGKEFAEKEGLCFMETSALKNLNVEQVFLQMITKIFEITSQRSLEAKMNAKPLKLLNGREIYLADEVTATKQAPCCS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0052 216 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Psa7g0052 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 190 IPR027417 -
Psa7g0052 216 Gene3D - 6 215 IPR027417 -
Psa7g0052 216 SMART ras_sub_4 11 177 - -
Psa7g0052 216 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Psa7g0052 216 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Psa7g0052 216 Pfam Ras family 15 174 IPR001806 GO:0003924|GO:0005525
Psa7g0052 216 ProSiteProfiles small GTPase Ras family profile. 8 216 IPR001806 GO:0003924|GO:0005525
Psa7g0052 216 PANTHER RAS-RELATED PROTEIN RABA6B 1 215 - -
Psa7g0052 216 SMART rab_sub_5 14 177 - -
Psa7g0052 216 SMART ran_sub_2 19 214 - -
Psa7g0052 216 TIGRFAM small_GTP: small GTP-binding protein domain 13 167 IPR005225 GO:0005525
Psa7g0052 216 PRINTS Transforming protein P21 ras signature 14 35 - -
Psa7g0052 216 PRINTS Transforming protein P21 ras signature 37 53 - -
Psa7g0052 216 PRINTS Transforming protein P21 ras signature 55 77 - -
Psa7g0052 216 PRINTS Transforming protein P21 ras signature 117 130 - -
Psa7g0052 216 PRINTS Transforming protein P21 ras signature 152 174 - -
Psa7g0052 216 PANTHER DRAB11-RELATED 1 215 - -
Psa7g0052 216 CDD Rab11_like 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0052 Psa-Chr7 2147885 2150062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0052 15 167 EF-hand Containing Proteins AT5G27540 28.485 4.90e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0052 K07976 - gmx:100784107 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0052 7 2147885 2150062 Psa7g0052 7 2147885 2150062 ECH