Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5333 ATGAACAAGAGACCTAGGGACACCACCGTCTACAAGCCCCTTCGCGATCTCTCCAGTCGAGAACTCGGCGAGTTACCCGCCAGAATTTTCCCCAACCGTCTAGCCGCCTCCGAGGATCTTGTTCTTCGACTTGATGTATTCAGAAAGCTGGACAAGCACAGAGGTTGTGTAAACACTGTATGCTTCAATGCAGATGGTGATGTTCTGGTTTCAGGTTCTGATGACAGGAGGATTATTCTCTGGGATTGGGAAACCGGTCGTACTAAGCTCTCTTTTCATTCTGGTCATAGTAACAATGTTTTCCAGGCTAAGTTCATGCCTCACTCCGATGATCGAACCATTGTCACTTGCGCTGCTGATGGCCAGGTTAGGCAAGCTCAAATTCTTGAACAAGGACATGTGGAAACTAAGTTATTGGCCAAGCATCAAGGACGGGCTCATAAGTTGGCTATCGAGCCCGGTAGCCCTCATATATTTTACACCTGCGGTGAAGATGGATTAGTACAGCATTTTGATCTGAGGACCAGGATTGCAACAGAACTTTTTACTTGCAAGCCACTTAAGGATAGATGGAGTTACGTGCCAGTCATCCTTCTTAATACAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGGTCTGATGCGTATACGCGACTTTTTGATATCCGCAAATATAAATGGGATGCATCAACTGATTTTGGTCAACCGATTGACTACTTTTGTCCTCCGCACTTGATTGGCGATGAGCGAGTAGGAATAACGGGCCTGGCCTTTTCTGAACAAAGGGAGCTTCTTGTATCCTATAATGATGAATTTATTTACCTTTTTACACAAGATATGGGTTTGGGACTGGATCCTATTCCTGGGTCCCCTATTTCTGTGAATAGTGATACAAGTGACATGGGAGATAGTTCTGTGCATTCTCCACCAAACATGGATGCTGATGATAAAGTCACCCCCCAGGTTTTCAAGGGACACAGGAATTGTGAGACTGTTAAGGGTGTTAGTTTTTTTGGGCCTAATTGTGAGTATGTGGTGAGTGGATCAGATTGTGGTCGGATTTTCACATGGAAGAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGACAAGCACGTTGTGAACTGTATTGAGTCTCATCCTCATACAACGGTTCTTGCAAGCAGCGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAGTATTGAGCAGGTACGAATTTAG 1269 0.45 MNKRPRDTTVYKPLRDLSSRELGELPARIFPNRLAASEDLVLRLDVFRKLDKHRGCVNTVCFNADGDVLVSGSDDRRIILWDWETGRTKLSFHSGHSNNVFQAKFMPHSDDRTIVTCAADGQVRQAQILEQGHVETKLLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTRIATELFTCKPLKDRWSYVPVILLNTIAIDPRNPNLFAVAGSDAYTRLFDIRKYKWDASTDFGQPIDYFCPPHLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGLDPIPGSPISVNSDTSDMGDSSVHSPPNMDADDKVTPQVFKGHRNCETVKGVSFFGPNCEYVVSGSDCGRIFTWKKKGGQLIRVMEADKHVVNCIESHPHTTVLASSGIEHDIKIWTPKALEKATLPKSIEQVRI* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5333 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
Psa6g5333 422 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 10 421 IPR045151 -
Psa6g5333 422 SUPERFAMILY WD40 repeat-like 42 403 IPR036322 GO:0005515
Psa6g5333 422 Pfam WD domain, G-beta repeat 48 82 IPR001680 GO:0005515
Psa6g5333 422 Pfam WD domain, G-beta repeat 367 403 IPR001680 GO:0005515
Psa6g5333 422 Pfam WD domain, G-beta repeat 325 358 IPR001680 GO:0005515
Psa6g5333 422 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 10 421 - -
Psa6g5333 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 87 - -
Psa6g5333 422 SMART WD40_4 365 404 IPR001680 GO:0005515
Psa6g5333 422 SMART WD40_4 43 82 IPR001680 GO:0005515
Psa6g5333 422 SMART WD40_4 192 225 IPR001680 GO:0005515
Psa6g5333 422 SMART WD40_4 132 172 IPR001680 GO:0005515
Psa6g5333 422 SMART WD40_4 242 281 IPR001680 GO:0005515
Psa6g5333 422 SMART WD40_4 320 362 IPR001680 GO:0005515
Psa6g5333 422 SMART WD40_4 85 127 IPR001680 GO:0005515
Psa6g5333 422 Gene3D - 38 406 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5333 Psa-Chr6 467074965 467077298 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5333 K11804 - gmx:100794236 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5333 6 467074965 467077298 Psa6g5333 6 467074965 467077298 ECH