Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5297 ATGTTTCTCACAAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCTCCTGAAGGCCGTTTGTTTCAGGTTGAATATGCAATTGAAGCCATCAAGCTTGGATCGACCGCAATTGGTTTGAAGACGAAAGAGGGTGTGGTCCTTGCAGTTGAAAAGCGTATTACTTCCCCTCTACTGGAGCCTAGCAGCGTTGAGAAAATTATGGAAATTGATGACCATATTGGTTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCATAGGTTCTCTTACGGTGAACCGATGACTGTAGAGTCCACAACTCAAGCTCTTTGTGACCTAGCTTTGCGCTTCGGTGAAGGCGATGAAGAATCAATGTCTCGACCATTTGGAGTGTCTCTCCTCATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTATACTGATCCTTCTGGCACATTCTGGCAATGTAATGCAAAAGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTTCAAGAACAATACAACAAGGAATTATCTCTTCAAGAAGCTGAGACTATTGCTTTATCCATTCTGAAGCAAGTTATGGAAGAGAAGGTTACTCCAAACAATGTTGACATTGCCAGGGTGGCTCCAGCATATCATCTTTATACCCCTTCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA 714 0.4412 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELSLQEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVISRL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5297 237 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 237 - -
Psa6g5297 237 Pfam Proteasome subunit 31 216 IPR001353 GO:0005839|GO:0051603
Psa6g5297 237 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 237 IPR029055 -
Psa6g5297 237 SMART Proteasome_A_N_2 8 30 IPR000426 GO:0006511|GO:0019773
Psa6g5297 237 CDD proteasome_alpha_type_5 8 218 IPR033812 GO:0019773|GO:0043161
Psa6g5297 237 ProSiteProfiles Proteasome alpha-type subunit profile. 23 234 IPR023332 -
Psa6g5297 237 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 234 IPR029055 -
Psa6g5297 237 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511|GO:0019773
Psa6g5297 237 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511|GO:0019773
Psa6g5297 237 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5297 Psa-Chr6 465259669 465264590 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5297 K02729 - twl:119983544 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5297 6 465259669 465264590 Psa6g5297 6 465259669 465264590 ECH