Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5052 ATGATGATTCATGTTCAAATAGCTAAACACCCACACAAACCTCTCAATCTCAAACTAAAACCGTTAACCCTCTTCTTCTCATCTTCTTCTTCTTCCTCTTCACAACAACAGCAACAAATTTCTGCAACTTGTGCAGTTTCAATCCTCACCAACCAACGTTCCAAATCCCGCTGGAACACTCTCCATTCCCTCTACCCAAACGGATTCAACCCAATCGATTTCTCCCAAATCACTCTCCACCTCCACAACAAACCCCACCTCGCACTTCACTTCTACCAATGGACCAAATCCAAATCCCTCTGTCACCACAACCTTTCCTCCTACTCCACCATCATCCATATCCTCGCACGTGCTCGTCTCTACTCACACGCTTACAACACCATCACGACCGCTCTTCTCACTTCCACGCCGTTCAAGCTTTTTGAGATTCTCGTTAATTCTTATCGAGATTGTGGATCTTCTCCTTTTGTTTTTGATTTATTGGTTAAAGCATGTTTACAGTCTACAAAAATTGAATCTTCCATTCAAATTGTTAGAATGTTACTCTCCCGTCGGATTAGCCCCAATGTTATGACTTTGAATTCTTTGATTTATAGGGTTTGTTCAAAATTTGGGGTGGATTTAGGGTATGAGATTTACCGGGAGTTTTTTAGGTTAGATAAAGAAAAATATGATTTTTCGCATAGGGGTTTTAGAGTTGTTAACCCTAATGTGCATACTTTTAATACATTGATGTTGTGTTGTTATCAAAATGGTTTGATGGACAAGGTTGAGGAAATTTGGGGTGAAATGAGTGAAATGAAGTGTGATCCTAATGGTTATAGCTATAGTTTATTGATGAGTGCATTTTGTGAGGGAGGGAGGATGGGAGATTGTGAAGAGACGTGGAAGGAAATGAGGAAGAAGGAAATTGAGCCTGATGTCGTTAGTTACAATACCATAATTGGTGGGTTATGTAAGATTGGTGATGTTGGGAAAGCTGAGGAGTTTTTCAGAGAAATGGGATTGGTTGGTATTCATGCAACTGGTTCAACTTATGAGCATCTTGTTAAGGGGTATTGTAGTGTCGAGGATGTTGATTCGGCTGTTCTTGTTTATAAGGATATGTTGAGGAAGGATTTTAGACCTGATGCATTGACCCTTGATATGGTGGTTAGGTTGCTTTGTGATAGAGGTAGGGTTGATGAAGCTATGGAGTTTTTCAGGAGTGGAGTTGTCAAGTTTGATTTGGTTCCAAAAGAGAAGAGTTATGAGGCCTTGATTAAAGGGTTGTGTTTTGAGGGTAAGATGGAACAAGGGTTGAAGCTCCAGGCAGAGATGGTAGGAAAAGGGTTTGAACCGAATTCGGATATATATGAAGCTTTTATTGACGGGCATATTAGACAAGGGAATGAGGAAATAGCAGAAGCTTTGAGGAGAGAAACGGGATCTTCCTGTAGCTGGAAGGGAGCTATCAGGAGTCCATTTTGCCATGAAGGCAAGAAGGTTGTGGTCATTGGTGGGGGTGACACTGGCACAGATTGCATTGGAACATCCATTTGTCATGGTTGTACTGCCGTCGTAAATCTTGAACTTCTCCCTCAGCCACCACCCACTAGGGCCCCAGGCAACCCATGGCCTCAGTGGCCTCGCATATTCCGTGTTGATTACGGCCGGAAACTAAATTTGGCAAAGATCAAGAACTACGAGAGCAAATTCAATTTAAGTGAGGAGATAATCGAGGCTGACCTTGTTTTACTTGCTATGGGATTCCTTGGCCCTGAGTCGACTATTGCAGAAAAGCTGGGCGTGGAGCAAGACAACAGGTCAAACTTCAAGGCTGATTATGGCCGTTTCTCAACCAATGTTGATGGGGTATTTGCAGCTGGGGACTGTCGGCGGGGTCAGTCATTGGTTGTATGGGCTATTTCAGAGGGAAGACAAGCTGCTTCCAAAGTTGACAGCTACCTCACCAAAGAAGACCAGAATATTGATGGGAATCAGGATGAATTTGTCCAGAGGCAACATGAGACTCAACAACAAGCACCAGGGCAGCAGCAAACACACAGTGATGACTTAGGACGCTTGTTTGTTTTTTCAAGGTCCTAA 2088 0.4296 MMIHVQIAKHPHKPLNLKLKPLTLFFSSSSSSSSQQQQQISATCAVSILTNQRSKSRWNTLHSLYPNGFNPIDFSQITLHLHNKPHLALHFYQWTKSKSLCHHNLSSYSTIIHILARARLYSHAYNTITTALLTSTPFKLFEILVNSYRDCGSSPFVFDLLVKACLQSTKIESSIQIVRMLLSRRISPNVMTLNSLIYRVCSKFGVDLGYEIYREFFRLDKEKYDFSHRGFRVVNPNVHTFNTLMLCCYQNGLMDKVEEIWGEMSEMKCDPNGYSYSLLMSAFCEGGRMGDCEETWKEMRKKEIEPDVVSYNTIIGGLCKIGDVGKAEEFFREMGLVGIHATGSTYEHLVKGYCSVEDVDSAVLVYKDMLRKDFRPDALTLDMVVRLLCDRGRVDEAMEFFRSGVVKFDLVPKEKSYEALIKGLCFEGKMEQGLKLQAEMVGKGFEPNSDIYEAFIDGHIRQGNEEIAEALRRETGSSCSWKGAIRSPFCHEGKKVVVIGGGDTGTDCIGTSICHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGRKLNLAKIKNYESKFNLSEEIIEADLVLLAMGFLGPESTIAEKLGVEQDNRSNFKADYGRFSTNVDGVFAAGDCRRGQSLVVWAISEGRQAASKVDSYLTKEDQNIDGNQDEFVQRQHETQQQAPGQQQTHSDDLGRLFVFSRS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5052 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Psa6g5052 695 Pfam PPR repeat family 236 284 IPR002885 -
Psa6g5052 695 Gene3D - 491 678 IPR036188 -
Psa6g5052 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Psa6g5052 695 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 4 475 - -
Psa6g5052 695 Pfam Pyridine nucleotide-disulphide oxidoreductase 570 639 IPR023753 GO:0016491
Psa6g5052 695 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 4 475 - -
Psa6g5052 695 SUPERFAMILY FAD/NAD(P)-binding domain 482 650 IPR036188 -
Psa6g5052 695 Gene3D Tetratricopeptide repeat domain 297 396 IPR011990 GO:0005515
Psa6g5052 695 Pfam PPR repeat 416 445 IPR002885 -
Psa6g5052 695 Pfam PPR repeat 345 373 IPR002885 -
Psa6g5052 695 TIGRFAM PPR: pentatricopeptide repeat domain 274 308 IPR002885 -
Psa6g5052 695 TIGRFAM PPR: pentatricopeptide repeat domain 239 272 IPR002885 -
Psa6g5052 695 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Psa6g5052 695 TIGRFAM PPR: pentatricopeptide repeat domain 416 449 IPR002885 -
Psa6g5052 695 TIGRFAM PPR: pentatricopeptide repeat domain 309 334 IPR002885 -
Psa6g5052 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Psa6g5052 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Psa6g5052 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 412 IPR002885 -
Psa6g5052 695 Pfam PPR repeat 302 334 IPR002885 -
Psa6g5052 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Psa6g5052 695 Gene3D Tetratricopeptide repeat domain 402 477 IPR011990 GO:0005515
Psa6g5052 695 Gene3D Tetratricopeptide repeat domain 219 296 IPR011990 GO:0005515
Psa6g5052 695 Gene3D Tetratricopeptide repeat domain 75 218 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5052 Psa-Chr6 437280906 437283695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5052 86 474 Glycosyltransferase AT1G05670 24.880 2.46e-37 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5052 - - mtr:MTR_0026s0200 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5052 6 437280906 437283695 Psa6g5052 6 437280906 437283695 ECH