Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5017 ATGGCCGCCGCTAGTTTAACTTCCCAAACCCTCAGAGTCCCCACACCAACTTCCCTCTCTCTCTCCTCCTCCAAACTTCCTCTCTCCTCCATTTCCCTCCGTTCCCACCCCCGTCGCTCTCTAGTCGTCTACGTCTCCTCCGACGCCAAACCCACCGTCCTCGTCGCCGAGAAGCTCGGCGAAGCAGGTCTAACTCTTCTCAAAGACTTCGCCAACGTGGATTGCTCCTACAATCTCAGTCCCGAGGAGCTTTGCACTAAGATCTCGCTCTGTGACGCTCTCATCGTCCGGAGTGGGACTAAGGTCTCCCGTGAAGTCTTTGAGTCCTCCGGTGGTAGGCTTAAGGTAGTCGGAAGAGCTGGCGTGGGAATCGATAACGTGGATCTGGCCGCCGCTACTGAACATGGTTGCTTGGTTGTTAATGCTCCCACTGCGAATACTGTTGCCGCTGCGGAGCACGGGATCGCTCTCTTGGCTTCCATGGCTAGAAATGTTGCTCAGGCTGATGCCTCTATTAAAGCTGGGAAGTGGCTGAGAAATAAGTATGTTGGAGTTTCCCTTGTTGGGAAGACACTTGCTGTACTGGGATTTGGGAAGGTTGGTACTGAAGTTGCTAGGCGTGCTAAGGGGCTTGGTATGAGTGTTATTGCTCATGATCCTTATGCTCCTGCTGATCGTGCACGTGCTATTGGTGTGGAGCTTGTGAGCTTTGATGTGGCCATTGCTACTGCTGATTTCATATCTTTGCATATGCCGCTTACGCCTGCTACCTCGAAGATGCTCAATGACGAGACTTTTGCTAAGATGAAGAAAGGAGTTAGAATTGTCAATGTTGCTCGTGGTGGAGTCATTGATGAGGATGCGCTTGTTAGAGCATTGGATTCTGGAATTGTAGCTCAGGCGGCTCTTGATGTTTTCACGGTGGAACCACCCGCCAAAGACAGCAAGTTGGTTTTACATGAGCTAGTTACTGCGACACCTCATCTAGGTGCCAGTACAACGGAAGCTCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGGGCGTTGAAAGGGGAGCTTGCTGCTACCGCAGTCAATGCACCAATGGTTCCCTCAGAGGTGTTAACTGAGCTAAAACCATTTGTTGTTCTTGCTGAGAAACTGGGTAGGCTGGCTGTCCAACTGGTAGCAGGAGGAAGTGGTGTAAAATCAGTGAAAGTGACTTATGCTTCTGCTAGGGCCCCGGATGATCTTGACACCCGTCTTCTTCGTGCTATGATAACAAAGGGTCTGATAGAGCCCATATCCAGTGTTTTTGTGAACTTAGTTAATGCCGACTTCACTGCTAAACAAAGAGGGCTAAGATTAACCGAGGAGAGAGTTATTCTTGATGGTTCACCTGAGAATCCACTTGAATTCATCCAGGTCCAGATTGCTAATGTGGAAACTCGGTTTGCCGGTGCCATATCAGATTCAGGGGAGGTTACAGTTGAGGGTCGCGTGAAAGATGGTGTCCCTCATCTTACGAAGGTTGGATCTTTTGAAGTTGATGTAAGTTTGGAAGGTAGCATCATACTTTGCAGACAGGTAGATCAACCAGGTATGATTGGAAAGGTGGGAAGCATCTTGGGTGAAGAGAATGTGAATGTCAGCTTCATGAGTGTTGCAAGGACTGCTCCAAGAAAGCATGCTGTGATGGCAATTGGAGTTGATGAACAACCCCGCAAAGAAAGTTTGAAAAAGATTGGAGATATTCCTGCTATCGAAGAATTTGTTTTCCTCAAGTTTTAA 1779 0.4874 MAAASLTSQTLRVPTPTSLSLSSSKLPLSSISLRSHPRRSLVVYVSSDAKPTVLVAEKLGEAGLTLLKDFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWLRNKYVGVSLVGKTLAVLGFGKVGTEVARRAKGLGMSVIAHDPYAPADRARAIGVELVSFDVAIATADFISLHMPLTPATSKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPAKDSKLVLHELVTATPHLGASTTEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPSEVLTELKPFVVLAEKLGRLAVQLVAGGSGVKSVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRLTEERVILDGSPENPLEFIQVQIANVETRFAGAISDSGEVTVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVARTAPRKHAVMAIGVDEQPRKESLKKIGDIPAIEEFVFLKF* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5017 592 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 155 330 IPR006140 GO:0051287
Psa6g5017 592 CDD ACT_3PGDH-xct 521 592 - -
Psa6g5017 592 Gene3D - 367 518 IPR029009 -
Psa6g5017 592 Gene3D - 146 328 - -
Psa6g5017 592 Gene3D - 55 355 - -
Psa6g5017 592 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 192 219 IPR029752 -
Psa6g5017 592 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 240 262 IPR029753 -
Psa6g5017 592 TIGRFAM PGDH: phosphoglycerate dehydrogenase 53 589 IPR006236 GO:0004617|GO:0006564
Psa6g5017 592 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 53 362 IPR006139 GO:0016616|GO:0051287
Psa6g5017 592 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 25 585 - -
Psa6g5017 592 Pfam ACT domain 520 581 IPR002912 -
Psa6g5017 592 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 373 490 IPR045626 -
Psa6g5017 592 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 269 285 IPR029753 -
Psa6g5017 592 Gene3D - 519 591 - -
Psa6g5017 592 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 50 179 - -
Psa6g5017 592 CDD PGDH_4 53 355 - -
Psa6g5017 592 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 149 331 IPR036291 -
Psa6g5017 592 SUPERFAMILY Serine metabolism enzymes domain 368 514 IPR029009 -
Psa6g5017 592 SMART AdoHcyase_NAD_2 180 327 IPR015878 -
Psa6g5017 592 SUPERFAMILY ACT-like 510 588 IPR045865 -
Psa6g5017 592 ProSiteProfiles ACT domain profile. 520 592 IPR002912 -
Psa6g5017 592 PANTHER FORMATE DEHYDROGENASE 1 25 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5017 Psa-Chr6 434937520 434941193 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5017 K00058 - gmx:100819264 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5017 6 434937520 434941193 Psa6g5017 6 434937520 434941193 ECH