Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5001 ATGTCTTCACAAGACCAAAAAACCAAACCAGAAATTCATGTTCTATTGGTAGCTTTTTCAGCTCAAGGTCACATAAACCCTTTGCTTCGACTAGGAAAATCACTATTAACCAAAGGCCTTAAAGTCACACTCGCCACCACGGAGTTAGTTTACCACCGCGTCTTCAAATCGACCACCACTTCAACCACCACCACCACGGCCATCCCTACCTCTTACACCATCAATGGAATTGAAGTTCTCTTTTTCTCCGACGGCTTAGATATCTCCGAAGGCCATATATCCGTCGACGAATTCATGAACCTAATAGCGAAATCCGGTCCCATTAGCCTCACAAATCTCATCAAAAACAATTTCCTCAACAATAGTTCTAAAAAACTAGCTTGCATCATTAACAACCCTTTTGTTCCTTGGGTTACAAACGTAGCTTTTGAACTCAATATCCCATGTGCATGTCTTTGGATTCAACCTTGCACTCTTTACTCCATATACTATAGTTTCTACAATCATTTAAACCATTTTCCAACCCTCGAAAGCCCCGAAACCGATGTCGAAATACCCGGTCTCCCATTATTGAAACCACAAGACCTTCCATCTTTTGTTCTTCCAACAAACGATATAAAAACCCTATCAAATGTTTTAAAACAAATGTTCCAAAACATGAAGAAACTGAAATGGGTATTAGCAAATTCTTTCTATGAATTAGAAAAAGATGCGATTGATTCAATGGCTGAGATTTTCCCAATAACAACCGTAGGTCCATTGGTTCCTCCATCATTACTAGGTCAAGATCAAATCGACGACGCAGCGATCGAAATGTGGAAGCCACAAGATTCATGCATGGAATGGCTTAACCAAAAGCCACCATCTTCAGTTATATATATCTCCTTCGGAAGTCTCATTTTTCTAAAGGAAAAACAAATGTTAAGCATAGCGAAAGCATTGAAGAACACTAACAAGTATTTTCTATGGGTGATGAAAGATAAAGAAGGAGACGAAGTTCATCTTCCTGAAAAATTCATAGAAGAAACAAAAGAGAAAGGACTGATAGTAACATGGTGTCCACAAACTAGGGTTTTGGTCCATCCTTCAATAGCATGTTTCTTAACACACTGTGGATGGAATTCAACGTTGGAAGCCATAACTGCTGGAGTGCCGATGATTGGTTATCCACAATGGACTGATCAACCGACCAATGCGAAACTCGTGTCGGATGTTTTTCGGACGGGGATTCGGTTGAAACCGGACAGTGATGGGTTTGTGGAGAGTGAGGAAGTTGAAAGGGCGATTGAGGATATTGTTGGAGGAGAAAAGTTTGAGGAGTTTAAGAAAAATGTTTTGGAGTTGAAAAGTGCGGCGAGGGAAGCGTCGGTAGATGGTGGATCTTCTGACAGGAATATTCAAACGTTTGTTGATGAGATTCTTGTGGGTGTTGAGAACAATATATGA 1446 0.4039 MSSQDQKTKPEIHVLLVAFSAQGHINPLLRLGKSLLTKGLKVTLATTELVYHRVFKSTTTSTTTTTAIPTSYTINGIEVLFFSDGLDISEGHISVDEFMNLIAKSGPISLTNLIKNNFLNNSSKKLACIINNPFVPWVTNVAFELNIPCACLWIQPCTLYSIYYSFYNHLNHFPTLESPETDVEIPGLPLLKPQDLPSFVLPTNDIKTLSNVLKQMFQNMKKLKWVLANSFYELEKDAIDSMAEIFPITTVGPLVPPSLLGQDQIDDAAIEMWKPQDSCMEWLNQKPPSSVIYISFGSLIFLKEKQMLSIAKALKNTNKYFLWVMKDKEGDEVHLPEKFIEETKEKGLIVTWCPQTRVLVHPSIACFLTHCGWNSTLEAITAGVPMIGYPQWTDQPTNAKLVSDVFRTGIRLKPDSDGFVESEEVERAIEDIVGGEKFEEFKKNVLELKSAAREASVDGGSSDRNIQTFVDEILVGVENNI* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5001 481 ProSitePatterns UDP-glycosyltransferases signature. 352 395 IPR035595 -
Psa6g5001 481 Gene3D Glycogen Phosphorylase B; 17 466 - -
Psa6g5001 481 CDD GT1_Gtf-like 13 457 IPR002213 GO:0008194
Psa6g5001 481 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 11 476 - -
Psa6g5001 481 PANTHER GLYCOSYLTRANSFERASE-RELATED 11 476 - -
Psa6g5001 481 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 257 452 IPR002213 GO:0008194
Psa6g5001 481 Gene3D Glycogen Phosphorylase B; 264 454 - -
Psa6g5001 481 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 12 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5001 Psa-Chr6 433841210 433843279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5001 2 476 Glycosyltransferase AT2G23260 42.324 2.18e-128 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5001 K13692 - gmx:100778995 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5001 6 433841210 433843279 Psa6g5001 6 433841210 433843279 ECH