Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4945 ATGGGGGACAAGAGGAGCACTGTTTCTTCTGCTGCAGCAGCCAAGTTTAAGTTTGGTATTATGGAGGAACAATTTAGGGCTCTTCAACTTCAACCTTCACAAATCAATGGAGTTTTTCAACAAGTTATGGAAGAGCGATTTAACATTGAGAGAAATATCCATCAGTATAACGATAGTAACTATTTTATAAATAGTGCTCCTTCGATGGAAGAGAGTAGTTCAACAATGAGAGGAGTTTATACCAGTCATAGAAATATATGGAGTAATGGTTATGGATCATCACTACCTTATGAAGATTACAGGATGATGGAGATGGCTTCTATGGGAGCACTCACTGTCACTCCACCAAGAATGTTTGGTTATCTCCATCATAACAACTTCTTTCAACCGCCATGGAGAGGATGGGTGGTTTTAATGGCAACAGATTGTCTCGAATGTCAATATTTGCAAGCAATAATCGAAGAGGGCGATCCAAGATCTGTTGCAATGATTCTCTCCGAAATAAAGAATAATTTACACGAGCTGATGAAACACCAGTTTGGCAACTATCTGATTCAAAAGCTTTTTGAAGCAAAGAAGGGCATCACTAATATCCAAATAGATTCTATTGTTTACTTGATTATCTCTGATGTTCAAAAGTTCAGTGACGTCTGCAAGAACAATCACGGAACTCGAGTTGTGCAGATAATGCTGGAGAATGTTAGATGTCCATTCACGAAATATGCTGTATTACATATGATGAAGTCTATCATCGTTGAATTGATGAACAATGTTAACGGTGGTTATGTCATTATACAATGCGTGAAGATTTTCCCGCCAACACTAAAAAAGGTGATCATGGATGAATTAGCAAAAAATTGTGTTGATATTGCAACACATAAGATTGGATGTTCAGTTGTTCAAACTTGTCTTTTAGAGAGTGGGATACTAGCCATAGACTTGATAACATCAATCATCTCAAATGCTACGTTGCTAGCAGAAGATCCTTACGGAAACTACGTGGTGCAATTTGTAATTAAAATGAAGTTCCCGCTAGTAAATAAACGGATGATAGCAGAACTTCGTGGAAAATTTGCTGGTCTCTCTATGAACAAGCATGGTAGCAATGTGGTGGAAGATCTATTGAGATGTTCTAATCAAGATGATGTTCATGCTATAGTAAAGGAGCTAATGAGAAGTACAAATTTCTTGGAGGTTATCCAAGATCCTTTTGGGAATTATGTTGTACAAAGAGCACTAAAATGCACTCAGGGCTATCTACGAAGAAAACTTTCTTTTCTCATCCGATCATATCGCAGAGAACTTCAATACCATCCCCACGGAAAACTAGTATTTGACAATGCCAAATCTAAAAGAAGATGA 1362 0.3752 MGDKRSTVSSAAAAKFKFGIMEEQFRALQLQPSQINGVFQQVMEERFNIERNIHQYNDSNYFINSAPSMEESSSTMRGVYTSHRNIWSNGYGSSLPYEDYRMMEMASMGALTVTPPRMFGYLHHNNFFQPPWRGWVVLMATDCLECQYLQAIIEEGDPRSVAMILSEIKNNLHELMKHQFGNYLIQKLFEAKKGITNIQIDSIVYLIISDVQKFSDVCKNNHGTRVVQIMLENVRCPFTKYAVLHMMKSIIVELMNNVNGGYVIIQCVKIFPPTLKKVIMDELAKNCVDIATHKIGCSVVQTCLLESGILAIDLITSIISNATLLAEDPYGNYVVQFVIKMKFPLVNKRMIAELRGKFAGLSMNKHGSNVVEDLLRCSNQDDVHAIVKELMRSTNFLEVIQDPFGNYVVQRALKCTQGYLRRKLSFLIRSYRRELQYHPHGKLVFDNAKSKRR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4945 453 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 105 452 IPR033133 GO:0003723
Psa6g4945 453 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 34 451 - -
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 395 416 IPR001313 GO:0003723
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 286 304 IPR001313 GO:0003723
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 251 283 IPR001313 GO:0003723
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 358 391 IPR001313 GO:0003723
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 325 339 IPR001313 GO:0003723
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 172 190 IPR001313 GO:0003723
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 215 234 IPR001313 GO:0003723
Psa6g4945 453 Pfam Pumilio-family RNA binding repeat 136 168 IPR001313 GO:0003723
Psa6g4945 453 ProSiteProfiles Pumilio RNA-binding repeat profile. 389 429 IPR001313 GO:0003723
Psa6g4945 453 ProSiteProfiles Pumilio RNA-binding repeat profile. 353 388 IPR001313 GO:0003723
Psa6g4945 453 SUPERFAMILY ARM repeat 132 447 IPR016024 -
Psa6g4945 453 ProSiteProfiles Pumilio RNA-binding repeat profile. 317 352 IPR001313 GO:0003723
Psa6g4945 453 Gene3D - 124 453 IPR011989 -
Psa6g4945 453 PANTHER PUMILIO-LIKE PROTEIN 34 451 - -
Psa6g4945 453 ProSiteProfiles Pumilio RNA-binding repeat profile. 167 205 IPR001313 GO:0003723
Psa6g4945 453 SMART pum_5 317 352 IPR001313 GO:0003723
Psa6g4945 453 SMART pum_5 353 388 IPR001313 GO:0003723
Psa6g4945 453 SMART pum_5 167 205 IPR001313 GO:0003723
Psa6g4945 453 SMART pum_5 209 245 IPR001313 GO:0003723
Psa6g4945 453 SMART pum_5 282 316 IPR001313 GO:0003723
Psa6g4945 453 SMART pum_5 391 427 IPR001313 GO:0003723
Psa6g4945 453 SMART pum_5 246 281 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4945 Psa-Chr6 430842966 430846415 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4945 - - mtr:MTR_1g106975 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4945 6 430842966 430846415 Psa6g4945 6 430842966 430846415 ECH