Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4920 ATGTCCTCTTCTCTCTCCACCCCTTTCATCCACCATTCTTCAACTCTTCGCCATGGAACCAACCCTTTCCCTTTTCCTCACGCCGCTTCCACTCCCAAACCGCAACGCTTCAAGCCTTTCTCCGCAAAGTGCTCTCTCGACCACATCCCCAAGCAATTCAGACAGGAAAATCTCAAAGATGGATTGATAGACAACTACAAGAATGTTCCTCAGTTTCTATATGGTCTTACTCCCTCACAAATGGACATGTTCGTGTCTGCAGACAATCCTATGAACAAGATGTCTCAATGTGTCACAGAGGAAAGCATTTCATCTGCCCAAAGTTATTTGGATCATAGTGGAATGAGTAGTATATCTAGCATGGACAATAATGGCTCTAGAAGGACCAGCATGAGTGTTAGTATGTATAGAGGAGGTGGTAGGGGGAGAAGGCCTAGGAAGTCTCCTCCGGATTTGCCTTCTTTTCTGTTGGATTCTCGGATAGTTTATCTTGGTTTGCCGATTGTACCAGCTGTGGCAGAACTTATTGTGGCTCAACTTATGTGGTTGGATTATGATAACCCTACGAAGCCTGTTCACTTATATATTAATTCATATGGGACTCAGAATGTGAAGAATGAGACAGTGGGAGCAGAAACCGATGCTTATTCTATAGCTGATATGATGGCTTATGTCAAATCTGAAATCTATACCGTGAATATGGCCGTGGCGTTTGGCCAAGCAGCAATGCTTCTGTCTCTTGGAAAAAAGGGTTATCGCGCTTTACTGCCAAATGCATCCACTAAAGTATTTCTCCCGAAAGTGCACAGATCAAGTGGTTCTGTCTCAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAATTCTGACTATTACATAGAGCTGTTGGCAAAAGGAACAGGGAAATCAAAGGAAGTAATTGCTAAAGACATCCAGAGGACAAGATATTTCCGAGCTCAGGAGGCCATAGACTATGGTCTTGCTGACAGAATATTGGACGAAGGGGCTAATTCATATGAGAAGCGGGATTATAATGAATTGCGTGCTATAAGAGCACTTGAGAGAGGTGGCGGGAACCCTCAAGCCGCCGCTCCTTCGGGAGTTTAG 1107 0.4444 MSSSLSTPFIHHSSTLRHGTNPFPFPHAASTPKPQRFKPFSAKCSLDHIPKQFRQENLKDGLIDNYKNVPQFLYGLTPSQMDMFVSADNPMNKMSQCVTEESISSAQSYLDHSGMSSISSMDNNGSRRTSMSVSMYRGGGRGRRPRKSPPDLPSFLLDSRIVYLGLPIVPAVAELIVAQLMWLDYDNPTKPVHLYINSYGTQNVKNETVGAETDAYSIADMMAYVKSEIYTVNMAVAFGQAAMLLSLGKKGYRALLPNASTKVFLPKVHRSSGSVSDMWIKAKELEANSDYYIELLAKGTGKSKEVIAKDIQRTRYFRAQEAIDYGLADRILDEGANSYEKRDYNELRAIRALERGGGNPQAAAPSGV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4920 368 Pfam Clp protease 153 334 IPR023562 -
Psa6g4920 368 Gene3D - 129 337 - -
Psa6g4920 368 PRINTS Clp protease catalytic subunit P signature 151 166 IPR001907 GO:0004176|GO:0004252|GO:0006508
Psa6g4920 368 PRINTS Clp protease catalytic subunit P signature 191 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Psa6g4920 368 PRINTS Clp protease catalytic subunit P signature 231 248 IPR001907 GO:0004176|GO:0004252|GO:0006508
Psa6g4920 368 PRINTS Clp protease catalytic subunit P signature 310 329 IPR001907 GO:0004176|GO:0004252|GO:0006508
Psa6g4920 368 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 38 352 IPR023562 -
Psa6g4920 368 CDD S14_ClpP_2 151 331 IPR001907 GO:0004176|GO:0004252|GO:0006508
Psa6g4920 368 SUPERFAMILY ClpP/crotonase 147 333 IPR029045 -
Psa6g4920 368 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 38 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4920 Psa-Chr6 429426937 429430623 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4920 K01358 - gmx:100820008 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4920 6 429426937 429430623 Psa6g4920 6 429426937 429430623 ECH