Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4899 ATGTTGCAAACCCTAGTTGCACCCGCAAGCTTTCGCTTCTCGAATCGAATATCCCTCCGAAGCTTCACTGTTCGTGCATTCACTTCCTCTACCGATTATGAAGATCAGTCTCGTGGTGGCCTCCCTCGATTCTTCTCCGAAACTCTCCCTCCTTCCAAGGGTAATGTTATTCGGGTAAAAGGCGATGAATTCTGGCACATGACTAAAGTATTGAGGTTGTCCACCAATGCTAGGGTACAGCTCTTCAATGGGAAAGGGGGTCTGGTAGAAGGGTGCATACAGAACATTGACCGCACTGGACTTGATTTTGTTGCATTAACTGATCCCAAGTTAGTACCTCCACAGAATTCACAATTGCATGTTTTTTCTGGTTTTGGTACTCTGAAGGGTGGCCGTGCCGACTGGCTTGTAGAGAAGTGTACAGAACTTGGAGCCAGTAGTGTTACTCCTCTATTGACTGAACGTTCTCCGTCAATCTCACAAAATCGGGTGGATAGACTGGAACGTGTAATTTTAGCAGCATCCAAACAATGCCAACGACTGCATGAAATGATCCTGAAACCTCCTGTAGAGATTGGTGATATTTTGCATCTTATTGCGCAATCAGAGCTATCTCTTGTTGCAACAGCAGAAGCAACTCCTGTTCTTAATGCATTGTCATTGGGAAAGGAAACTAGTGGCTTACTCATAATCGGACCAGAAGGCGATTTCACTGAGAAAGAAGTGAATATGATGATGGAAGCAGGTGCTAAAGCTGTTAGTCTCGGGCCTCATCGTCTTCGAGTTGAAACTGCTGCAATAGCACTTTTGTCTACTGTCATGTTATGGTCTGACTCTCAGCAAACTTCAGTCTCTTGA 858 0.451 MLQTLVAPASFRFSNRISLRSFTVRAFTSSTDYEDQSRGGLPRFFSETLPPSKGNVIRVKGDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFVALTDPKLVPPQNSQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISQNRVDRLERVILAASKQCQRLHEMILKPPVEIGDILHLIAQSELSLVATAEATPVLNALSLGKETSGLLIIGPEGDFTEKEVNMMMEAGAKAVSLGPHRLRVETAAIALLSTVMLWSDSQQTSVS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4899 285 CDD RsmE-like 119 271 IPR046886 -
Psa6g4899 285 SUPERFAMILY alpha/beta knot 117 277 IPR029028 -
Psa6g4899 285 Pfam RNA methyltransferase PUA domain 60 104 IPR046887 -
Psa6g4899 285 Pfam RNA methyltransferase domain 117 273 IPR046886 -
Psa6g4899 285 SUPERFAMILY PUA domain-like 43 102 IPR015947 -
Psa6g4899 285 Gene3D - 40 284 IPR029026 -
Psa6g4899 285 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 41 282 IPR006700 GO:0006364|GO:0008168
Psa6g4899 285 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 55 274 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4899 K09761 - gmx:100777253 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4899 6 427909094 427912186 Psa6g4899 6 427909094 427912186 ECH