Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4870 ATGTCGAATAATAATCAACAATATCCAGGCTTACAGCCACTTCGGCCTCCGATGTCCGGTTCAATGGATCCTCAGAGAAATTTTGGTCAACTCATGCCTGTTCAATTTCGCCCCGGTGTACCAAATCAACAGGCGCAACAGTTTGTTCCCATGCCTCCTCAACATTACCACCAACAGTATAATGTTGGAATGCCTCCTCAAAATCAACAGCCGCAATTTTCTCAACCAATTCAACAGTTTCCTCCGAGAGTTGGTCAGCAGTTACCAATTCAATCACAAATGATGCAAATGCCAATTGCTCGGCCAAACATGCAAACCTCGTCCGATTCAATGATGCCACAGCCTGATTCTCAAGCTCCAAATGGATACACACCAGGTTTAGGTGGGCCCGGAATGCCACTTTCTTCATCGTTTATGTTTGCGCCATCCTCTTATGGTCAAGCGCCACAAACGAATTTTAATTCTACCAGCCAATACCAACCTGTTCCCCAAATCCAAGCTCCTGCTGGTTCTTTGTCCCAGAGCATTACTCCTGGTACAACTCCTCAGAGCAACGGCGAGCAACCTACAGCTACAACTGTCATGCCTTCAGCTACAAATGTCCAGCCACACCTTACCAAGGTTGGCTCCTCTGATTGGATCGAGCATACGTCCTCTACTGGAAGAAGATTTTACTACAATAAGAGGACTAAATTATCTAGCTGGGAGAAGCCTTTTGAATTGATGTCACCTATGGAGAGGGTAGATGCATCAACAAACTGGAAGGAGTATACAAGTCCTGATGGAAGAAAGTATTACTACAACAAGATCACGAAGGAATCAAAGTGGTTAATTCCCGAGGAACTGAAGTTTGCCCGTGAGCAAGTTGAAAAGGAAAAGGTCAATGCAACTCTTCCCGAGCCACTACTGAATCCCTGTACTCAACCCTCTGCAGTTTCTGTGACTGAAGCAATGCCTAGTACGGATAAATCATCTTTACCTGGCCAAGATGAACCAACAAGTCCTGTTTCAGTTGCTCCAGTCGTCACCACGTCTCCAATTAATCAGCAATCTGAGATGACTTCCGGATCACATGTCTCTCCTTCTGCAGCCGCTATAACTGAAACAAAAAATGATGAACCTGAAGCACCCATAAATACTATCAATCCACCAGATGTTAGTGTGGGAAGTGATAGAGCATCTGTTTCTGATATTAATACTGCTGCAACACCAAAGAATGACGCCAATAACTTTTCAGCTCAAGATACTGTAGTTTCTGCTGATGGAGTTCCAGGAGAAGATAAAGAAGTTGGAAAAAATGATTCAATAGGGGAAAATGTTAATGACGTGGCCTCAGAAACAAAGGCAGTTGAGCCAGATTCCTTAGTTTATGTGAATAAGATGGAAGCTAAAGATGCATTCAAAGCACTCTTGGAGTCTGTAAATGTTGGTTCTGACTGGAATTGGGATCGGGCCATGCGATTAATTATTAATGACAAAAGGTATGGTGCTTTAAAATCTCTGGGAGAAAGGAAGCAAGCTTTCAATGAGTACTTAAGTCAAAGGAAAAAACAAGAAGTAGAAGAAAAGCGTACGAGGCACAAAAAAGCACGGGAGGATTTTAGAAAAATGTTGGAAGAGTCCACTGAGTTGACTTCATCCGCCAGATACAGCAAAGCAATAGCTATTTTTGAAAATGATGAACGTTTCAAAGCCGTTGAGCGAGAAAGAGATCGCAAGGATATGTTCGATAGCTTCTTGGAAGAACTTTCAAACAAGGAACGGGCTAAGGTACTGGAGGAACGGAAGCGAAATACAGTGGAATACAGGAAATATTTGGAATCTTGTGACTTTATAAAGGCTAATACGCAGTGGCGAAAAGTTCAAGACCGCTTAGAGGCCGATGAAAGATGTTCTCGACTTGAGAAAATTGATCGTTTGGAAATATTTCAAGATTATTTGCGTGATTTAGAGAAGGAAGAGGAAGAGCAGAAAAAGATACAGAAGGAAGAATTGAGAAAGACGGAACGTAAAAACCGTGATGAGTTCCGCAAATTGATGGATGAACATATCGCCTCAGGCATTCTTACAGCAAAAACTCACTGGCGTGATTATCATTCACAGGTGAAAGAATTACCAGCCTATCTAGCAGTAGCTTCAAACACATCGGGTTCAACTCCAAAAGAGTTGTTTGAGGACCTTGCTGAAGAGCTAGAGAAACAATATCAAGAAGATAAGAGCCAGATAAAAGATACAGTGAAGTTGGCAAAGATCACCTTGTCAACAACCTGGACTTTTGAAGACTTCAAATCAGCTTTATCAGAACACATTAACTCTCTGCCTGTATCTGATAACAATTTAAAGTTAGTGTTTGAAGAGCTACTAGAACGGGCTAGGGAGAAGGAGGAGAAGGAAGCTAAGAAGCGTAAACGTCTTGCAGATGATTTCTTTCATTTACTATATTCTACCAAGGATATTTCCGAGTCTTCAAAGTGGGAGGACTTTAGGCCACTTGTTGAAGATAGCCAAGAGTTCAGATCTATTGGAGATGCGAGTCTCTGCAAGAAAATATTTGAGGAGTACGTTACGCAACTGAAAGAAGAGGCAAAAGAGAATGAGCGGAAACGAAAAGAGGAAAGGGCAAAGAAGGATAAAGATAGAGAGGAAAGAGAAAGGAGGAAAGCAAAGCAGAGAAGGGAAAAAGAGGGAGGGCGTGAAAGATGGAAAGAGGATACACATAAGAGAGATAGAACCGACAGTGACAGTATGGACTTAAATGATATCCAATCGTCTAAAGAAAACAAAAGGAAGCAGCATCAAAGTCCGGACTATGTTTCTCACGAAACTGATAAAGAGAGGACTAAGAAATCTCACGGTCACAGTAGCGACCGCAAGAAATCCAGACGGCATAGTTCTGGTCACGACTCTGATGAAGGACGGCATAAGCGACACAGGAGAGACCACCGTGATTCTCACAGAGAAGGCGATCTGCTTGAAGATGGGGAGTTTGGCGATGACATGGTTATGGATAGATGA 3015 0.4255 MSNNNQQYPGLQPLRPPMSGSMDPQRNFGQLMPVQFRPGVPNQQAQQFVPMPPQHYHQQYNVGMPPQNQQPQFSQPIQQFPPRVGQQLPIQSQMMQMPIARPNMQTSSDSMMPQPDSQAPNGYTPGLGGPGMPLSSSFMFAPSSYGQAPQTNFNSTSQYQPVPQIQAPAGSLSQSITPGTTPQSNGEQPTATTVMPSATNVQPHLTKVGSSDWIEHTSSTGRRFYYNKRTKLSSWEKPFELMSPMERVDASTNWKEYTSPDGRKYYYNKITKESKWLIPEELKFAREQVEKEKVNATLPEPLLNPCTQPSAVSVTEAMPSTDKSSLPGQDEPTSPVSVAPVVTTSPINQQSEMTSGSHVSPSAAAITETKNDEPEAPINTINPPDVSVGSDRASVSDINTAATPKNDANNFSAQDTVVSADGVPGEDKEVGKNDSIGENVNDVASETKAVEPDSLVYVNKMEAKDAFKALLESVNVGSDWNWDRAMRLIINDKRYGALKSLGERKQAFNEYLSQRKKQEVEEKRTRHKKAREDFRKMLEESTELTSSARYSKAIAIFENDERFKAVERERDRKDMFDSFLEELSNKERAKVLEERKRNTVEYRKYLESCDFIKANTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMDEHIASGILTAKTHWRDYHSQVKELPAYLAVASNTSGSTPKELFEDLAEELEKQYQEDKSQIKDTVKLAKITLSTTWTFEDFKSALSEHINSLPVSDNNLKLVFEELLERAREKEEKEAKKRKRLADDFFHLLYSTKDISESSKWEDFRPLVEDSQEFRSIGDASLCKKIFEEYVTQLKEEAKENERKRKEERAKKDKDREERERRKAKQRREKEGGRERWKEDTHKRDRTDSDSMDLNDIQSSKENKRKQHQSPDYVSHETDKERTKKSHGHSSDRKKSRRHSSGHDSDEGRHKRHRRDHRDSHREGDLLEDGEFGDDMVMDR* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4870 1004 CDD WW 211 238 IPR001202 GO:0005515
Psa6g4870 1004 Gene3D - 250 293 - -
Psa6g4870 1004 SUPERFAMILY FF domain 662 737 IPR036517 -
Psa6g4870 1004 Gene3D - 196 249 - -
Psa6g4870 1004 Coils Coil 848 898 - -
Psa6g4870 1004 Pfam FF domain 671 726 IPR002713 -
Psa6g4870 1004 Pfam FF domain 529 577 IPR002713 -
Psa6g4870 1004 Pfam FF domain 462 511 IPR002713 -
Psa6g4870 1004 Pfam FF domain 807 854 IPR002713 -
Psa6g4870 1004 Pfam FF domain 600 646 IPR002713 -
Psa6g4870 1004 Coils Coil 513 540 - -
Psa6g4870 1004 MobiDBLite consensus disorder prediction 861 950 - -
Psa6g4870 1004 ProSiteProfiles FF domain profile. 595 649 IPR002713 -
Psa6g4870 1004 SUPERFAMILY FF domain 518 583 IPR036517 -
Psa6g4870 1004 Coils Coil 721 748 - -
Psa6g4870 1004 Gene3D FF domain 797 869 IPR036517 -
Psa6g4870 1004 MobiDBLite consensus disorder prediction 1 27 - -
Psa6g4870 1004 Gene3D FF domain 460 515 IPR036517 -
Psa6g4870 1004 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 3 997 - -
Psa6g4870 1004 Coils Coil 784 808 - -
Psa6g4870 1004 Coils Coil 643 682 - -
Psa6g4870 1004 ProSitePatterns WW/rsp5/WWP domain signature. 213 238 IPR001202 GO:0005515
Psa6g4870 1004 SUPERFAMILY FF domain 593 656 IPR036517 -
Psa6g4870 1004 MobiDBLite consensus disorder prediction 961 992 - -
Psa6g4870 1004 Pfam WW domain 253 279 IPR001202 GO:0005515
Psa6g4870 1004 Pfam WW domain 211 238 IPR001202 GO:0005515
Psa6g4870 1004 ProSiteProfiles WW/rsp5/WWP domain profile. 211 240 IPR001202 GO:0005515
Psa6g4870 1004 ProSiteProfiles FF domain profile. 526 582 IPR002713 -
Psa6g4870 1004 ProSiteProfiles WW/rsp5/WWP domain profile. 248 281 IPR001202 GO:0005515
Psa6g4870 1004 SUPERFAMILY WW domain 212 246 IPR036020 GO:0005515
Psa6g4870 1004 SUPERFAMILY FF domain 795 864 IPR036517 -
Psa6g4870 1004 SMART FF_2 802 857 IPR002713 -
Psa6g4870 1004 SMART FF_2 595 649 IPR002713 -
Psa6g4870 1004 SMART FF_2 527 582 IPR002713 -
Psa6g4870 1004 SMART FF_2 669 730 IPR002713 -
Psa6g4870 1004 SMART FF_2 460 514 IPR002713 -
Psa6g4870 1004 ProSiteProfiles FF domain profile. 460 514 IPR002713 -
Psa6g4870 1004 MobiDBLite consensus disorder prediction 861 1004 - -
Psa6g4870 1004 MobiDBLite consensus disorder prediction 311 367 - -
Psa6g4870 1004 Gene3D FF domain 590 659 IPR036517 -
Psa6g4870 1004 Gene3D FF domain 660 742 IPR036517 -
Psa6g4870 1004 Gene3D FF domain 517 589 IPR036517 -
Psa6g4870 1004 SUPERFAMILY FF domain 457 515 IPR036517 -
Psa6g4870 1004 CDD WW 252 281 IPR001202 GO:0005515
Psa6g4870 1004 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 3 997 IPR039726 GO:0045292
Psa6g4870 1004 SMART ww_5 208 240 IPR001202 GO:0005515
Psa6g4870 1004 SMART ww_5 249 281 IPR001202 GO:0005515
Psa6g4870 1004 MobiDBLite consensus disorder prediction 311 393 - -
Psa6g4870 1004 SUPERFAMILY WW domain 241 282 IPR036020 GO:0005515
Psa6g4870 1004 ProSiteProfiles FF domain profile. 667 730 IPR002713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4870 Psa-Chr6 426078160 426091988 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4870 K12821 - gmx:100796870 1299.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4870 6 426078160 426091988 Psa6g4870 6 426078160 426091988 ECH