Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4601 ATGGATTCCTCCGATATCAAGAAAGACCAAGCTCCACCCGCACCCGAAGACCCCGAGAAGAAGAAGAAAAAGGATGAAAAGGCAAGAGAGAAGCAATTGAAAAAAGAGAAGTTTCTTCAGAAGCAAGCTCAGCAACAACAAGCGCAACAATCAGCCAATGCTTCTAAAAAGAGTGAAAAGAAAGCTGTGAAACGTGGTCCAGAGGATGAGAATCCAGCTGATTACATTGATCCCGATACTACGCTGGGTGATAAGAAACAAATGTCGCGGCAATTGGCGAAACAGTATAATCCAACTGCCGTTGAGAAATCGTGGTATGAATGGTGGGAGAAATCGAAGTACTTTGTGGCAGATGCCAGCAGCACCAAACCGCCTTTTGTTATCGTTTTGCCTCCACCAAACGTGACAGGTGCTCTCCATATAGGTCATGCTCTAACAGCTGCAATAGAGGATACAATGATTCGTTGGCGAAGAATGTCTGGATACAATACTTTGTGGGTTCCTGGGATGGATCATGCTGGAATTGCTACACAGGTAGTTGTGGAGAAAAAGATAATGCGTGAAAAGCAACTAACCAGGCATGATTTGGGACGTGAAAAATTTATTGAAGAGGTTTGGGAATGGAAAAACAAGTATGGCGGTACAATTTTGCAACAATTGCGTCGATTAGGAGCATCTTTGGATTGGTCCCGCGAGTGCTTCACAATGGATGACAAAAGATCTAAGGGTGTAACAGAGGCTTTTGTGAAGCTTTACAAGCAAGGCCTTGTCTATAGGGACTTACGGTTAGTAAATTGGGATTGTGTGTTGCGAACGGCAATATCTGATATTGAGGTGGATTATATTGATATAAAAGAAAGGACGCTACTAAAGGTTCCGGGATACGACAAACCGGTTGAATTTGGAGTTTTAACAAAATTTGCGTACACTTTGGAAGGAAATCTAGGTGAAGTTGTTGTTGCCACAACTAGGATAGAAACTATGCTTGGTGACACTGCTATTGCCGTACATCCTTCTGATGACCGATACAGCCAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGAAGAAAACTTCCTATCATTTGTGATGCCATTCTTGTTGATCCAAAGTTCGGGACAGGTGCTGTTAAGATTACACCAGCCCACGATCCTAACGATTTTGAGGTTGGGAAACGACACAACCTTGAATTTATTAATGTTTTCACTGATGATGGGAAAATAAATTCCAATGGAGGCTCTGAATTTTTAAACATGCCACGATTTAAAGCCAGAGAAGCAATAACAGAAGCTTTACAAAAGAAGGGTCTTTATAGAGGATCTGAAAACAATGAGATGCGCCTTGGTGTCTGTTCAAGAAGCAATGATGTAATAGAGCCCATGATAAAGCCACAGTGGTATGTCAATTGCAGTGATATCGCAAAGGAAGCTCTTCATGCTGTCACGGATGAGGAAAACAAAAGGGTAGAGATTTTTCCAAAACAATATGTGGCTGATTGGAAGAGATGGCTAGAAAACATACGCGATTGGTGCATTTCAAGGCAGCTATGGTGGGGTCACCAAATTCCTGCATGGTACGTCACTCTAGAAGATGATACACTGCAGGAATTGGGTGCTTACCACGACCATTGGATAGTGGCTAGAAATGAAGTGGAAGCTCGGGATGAGGCTAACCAGAAGTATAATGGAAAGAAGTTTAATTTAACCCGGGATCCTGACGTTCTCGATACATGGTTTTCTTCTGGTCTATTCCCGTTAACAGTGCTGGGATGGCCTGATGACTCAGAAGACCTGAAGGCATTCTATCCAACTTCTGTTTTGGAAACTGGCCATGACATCCTCTTTTTTTGGGTTGCACGTATGGTGATGTTAGGAATGAAGTTAGGCGGTGATGTGCCTTTTAGCAAGATTTATTTGCACCCTATGATTCGTGATGCACATGGACGCAAGATGTCTAAATCTTTGGGGAATGTTATTGATCCCATTGAGGTGATAAATGGGATATCACTGGAAGGTCTGCACAAGAGGTTAGAAGGCGGTAACCTTGACCCTAAAGAATTAGCTGTTGCCGTAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGATGAATGTGGTGCTGATGCTCTCCGTTTTTCCCTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGATATCGCCAATGGTGTAACAAATTATGGAATGCAGTACGATTTGCTATGAGCAAGCTAGGAGATGATTATATTCCTCCTGCAACTTTGTCTCCGGATGCTCTCCCATTTAGCTGCCAGTGGATACTGTCTGTGTTGAATAAAACGATATCCAAAATAACCAAGTCTCTAGAATCATATGAATTTTCACAAGCTACCACTGCCGTGTATTCTTGGTGGCAGTATCAATTGTGCGATGTGTTCATTGAAGTGATCAAGCCTTACTTTTCTGGTAACGATCCCAAGTTTACTTCTGAAAGACGCTTTGCTCAAGATACTTTGTGGTTTTGTTTGGACAATGGCCTGCGATTGCTCCATCCTTTTATGCCTTTTGTCACAGAAGAATTGTGGCAACGCCTTCCTTCGCCCAGGGAATGTAAGAGAGCAGAATCTATCATGATAGCTGATTATCCATCAGCTATAGAGGGCTGGAATAATGTAAGGGTGGAGAGTGAGATGTACCTCATTGAGGCTACCGTGAAGTCTCTCAGGTCATTGGCAAAAGAGAGACGTGACAGGCGACCGGCTTTTGTTCTCTGCCGAACACAGGCGGTTACAGACATTATTAGCAGCCATCAATTGGAGATTACAACATTAGCTAATCTATCCTCTTTGACCGTAATCGCTGAAAGTGAAGCTGTTCCATCTGGATACGCTACTACTGTCGTAAATGAAAGCATTTCTGTTTATTTAGAGCTTCAAGGAGTTAATTCTGCAGAAGCTGAGCTTGGAAGGAAAAAGAAGATAGATGAGCTAAACAAGCAAATAGAAAGATTAGAGAAGATTATGAATGCTCCAGGTTATGAAGAGAAGGTTTCGCTACAAATTCGAACAAAGAATGAGGAGAAGCTAGTATCTCTAAAGGAGCGTTTATTGCTCGAGGAAACGGCTGGACTAAGTGTCTAG 3144 0.4243 MDSSDIKKDQAPPAPEDPEKKKKKDEKAREKQLKKEKFLQKQAQQQQAQQSANASKKSEKKAVKRGPEDENPADYIDPDTTLGDKKQMSRQLAKQYNPTAVEKSWYEWWEKSKYFVADASSTKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMREKQLTRHDLGREKFIEEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKGVTEAFVKLYKQGLVYRDLRLVNWDCVLRTAISDIEVDYIDIKERTLLKVPGYDKPVEFGVLTKFAYTLEGNLGEVVVATTRIETMLGDTAIAVHPSDDRYSQFHGKYAVHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSEFLNMPRFKAREAITEALQKKGLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCSDIAKEALHAVTDEENKRVEIFPKQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDTLQELGAYHDHWIVARNEVEARDEANQKYNGKKFNLTRDPDVLDTWFSSGLFPLTVLGWPDDSEDLKAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEGGNLDPKELAVAVEGQKKDFPNGIDECGADALRFSLVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPATLSPDALPFSCQWILSVLNKTISKITKSLESYEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDPKFTSERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPRECKRAESIMIADYPSAIEGWNNVRVESEMYLIEATVKSLRSLAKERRDRRPAFVLCRTQAVTDIISSHQLEITTLANLSSLTVIAESEAVPSGYATTVVNESISVYLELQGVNSAEAELGRKKKIDELNKQIERLEKIMNAPGYEEKVSLQIRTKNEEKLVSLKERLLLEETAGLSV* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4601 1047 Gene3D - 300 445 IPR009008 GO:0002161|GO:0006418
Psa6g4601 1047 Hamap Valine--tRNA ligase [valS]. 92 1041 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 Pfam Anticodon-binding domain of tRNA ligase 773 915 IPR013155 GO:0004812|GO:0006418
Psa6g4601 1047 Coils Coil 29 49 - -
Psa6g4601 1047 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 133 144 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa6g4601 1047 MobiDBLite consensus disorder prediction 1 38 - -
Psa6g4601 1047 MobiDBLite consensus disorder prediction 57 72 - -
Psa6g4601 1047 Gene3D HUPs 533 679 IPR014729 -
Psa6g4601 1047 PANTHER BNAA08G31530D PROTEIN 16 1033 - -
Psa6g4601 1047 TIGRFAM valS: valine--tRNA ligase 93 1030 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 PRINTS Valyl-tRNA synthetase signature 126 137 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 PRINTS Valyl-tRNA synthetase signature 337 354 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 PRINTS Valyl-tRNA synthetase signature 454 467 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 PRINTS Valyl-tRNA synthetase signature 572 593 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 PRINTS Valyl-tRNA synthetase signature 603 621 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 Pfam tRNA synthetases class I (I, L, M and V) 105 728 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa6g4601 1047 Gene3D HUPs 93 289 IPR014729 -
Psa6g4601 1047 Gene3D - 687 917 - -
Psa6g4601 1047 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 739 994 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa6g4601 1047 MobiDBLite consensus disorder prediction 1 90 - -
Psa6g4601 1047 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 299 449 IPR009008 GO:0002161|GO:0006418
Psa6g4601 1047 CDD Anticodon_Ia_Val 727 866 IPR033705 -
Psa6g4601 1047 PANTHER VALYL-TRNA SYNTHETASES 16 1033 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Psa6g4601 1047 CDD ValRS_core 124 727 - -
Psa6g4601 1047 SUPERFAMILY Nucleotidylyl transferase 92 737 - -
Psa6g4601 1047 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4601 Psa-Chr6 399952051 399959393 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4601 K01873 - gmx:100798111 1799.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4601 6 399952051 399959393 Psa6g4601 6 399952051 399959393 ECH