LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g4564	ATGATTGAAGTTGGTTACAAGTATCGCTTTTTCGGCCAAGATGCCGAGACTGCTGCTAGAGTTTTGGGAATATATGCTCATATGAATCATAATTTTTTAACCGCTAGCATACCAACTATTAGATTACACGTCCATGTGAGGAGGCTTGTGAGTGCAGGGTATAAAGTTGGTGTTGTTAAGCAGACTGAAACTGCTTCTATTAAGGCCCATGGTGTGAACCGGGCCGGGCCATTTTGCCGAGGCTTGTCGGCGTTGTATACGAAGGCCACACTGGAGGCGGCTCAGGACTTGGGGGGAGGGGAAGATGAATGTGGGTCAGTGAGTAACTACTTGCTGTGTGTTGTGGAGAAGAGCATTTCGGGGGAGAGAAAATCTAAGTGTGGCGTGGAAGGCGGTTTTGATGCGAGAATTGGAATTGTTGGTGTGGAGATATCAACCGGAGATGTTGTTTATGGAGAGTTTAATGACAATTTTTTGAGGAGTGAACTTGAGGCTGTTGTTGTTAGTTTGTCTCCTGCTGAGTTGCTTCTTGGGGACCCTCTTTCCAAACAAACTGAGAAGTTATTATTGGCTTTTGCTGGACCTTCCTCAAATGCTCGTGTGGAGCGTGCCTCACGAGATTGCTTCACTGATGGAGGCGCTTTTGCTGAAGTTATAACTTTGTATGAAAACATGTATGTTGATAGTTCATCAGATTCAATGCAAGGCAATGAATTGACTGAGCATAAAAGTCAGCAGATGGAAGTCAAGGAGGCCATGAACCTTCCAGATTTGGTTGTCGAAGCTCTAGCTTTAACCATACGCCATTTGAAGGGATTTGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGGCCCTTTGTAAACAATACTGAAATGACTCTCTCAGCCAATACACTACTACAACTGGAGGTCTTACAAAATAACAGCGATGGATCTGATAGTGGTTCCTTGCTACACACTATGAATCACACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTAACACACCCACTGTGTGATCAAACCTTGATTTCTGCCCGTCTTAATGCTGTATCTGAAATCGCGGAGTCTATGGGAACTTGTAATGGCATGAAAAATCTTGGATGTTTTGAGGAAGATTCTGATGTAGCGATTGTGCAGCCTCAGTTAGCACACATACTTTCATTGGTTTTGAAAGCCCTGGGCCGGGCACCTGATATACAGCGTGGGATTACAAGAATTTTCCATTGCACTGCTACCCCGTCTGAGTTTATTTCCATTATTCAAGCTATTTTGTCTGCTGGAAAACGGCTTCAGCAACTTAACATAGGAGAGGGGGATAACGATAATAATAAAAAATTGTACTCTGGTTTGTTAAAGAAGTTAATTTCAACTGCTTCCTCTGCAAATGTTATTGGTAAAGCAGCAAAAATGTTGTCATCTTTAAATAAAGACTCTGCTAATAAAGGAGACCTGACAAATATGATCGTGTCAACTGAGGGACAATTTCCAGAGGTATTTACAGCTCGAAAGGCTTTTCAGATGGCAGTGGAACAATTAGATCCATTGATTGGCTTGTACCGCAAACGGCTTGGAATGCGAAATTTGGAATATATGTCTGTTTCTGGTGTAACTCACTTGATAGAGTTATCATCTGATGTAAAAGTTCCTTCAAATTGGATTAAGGTAAATAGCACAAAGAAAACAATCCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGAGTTATCATTAGCAAAAGAGAAGCTTACTGTTGCGTGCCGAGCTGCATGGGACAGCTTTCTGAGGGACTTCAGTAAACATTATGCTGAGTTCCAAGCTTTTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTCGCCACTCTTTCAAGAGATAAGGGTTATGTCCGCCCTGGCTTTGTAGATGACGACGAGCCTGTTCAGATACAATTTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTGCAAAATAATTTTGTCCCAAACGATACAAAATTGCATGCTGGTAGAGAGTACTGTCAGATTGTCACTGGACCCAATATGGGAGGGAAAAGCTGCTATGTTCGCCAAGTGGCTCTGATCGCTCTCATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTACATGTCCTGGATGGAATCTACACTCGGATGGGTGCTTCTGACAGTATTCAGTTAGGAAGAAGCACTTTCCTAGAAGAATTGAGTGAGACTTCACACATACTTCATAGATGCACAGAACGTTCACTGGTTATACTTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGCATGGCCATTGCTTATGCCACATTACATTATCTTCTTAAGCAGAAGAAAAGCTTGGTCCTCTTTGTCACTCATTATCCAAAGATTGCCAGTCTGGAAACTGAATTTCCAGGCTCTGTAGCAGCATATCACATGTCACATATGACTGCACCCGATGATTCAAGTAAAAACTCCAATGATCAAGAAAATGTCACTTATTTATATAAGCTCGTACCCGGTGTTTCAGAGAGGAGTTTTGGTTTTAAGGTTGCCCATCTTGCACAGTTACCACCACATTGCATTAGCCGAGGTATTGTCATGGCTTCCAAATTAGAATCACTAGTAAACAGTAGATTACATGGTAGATCAGGAGAGTTGTTGTTGGAAGCACCCGTTATTGATCAAGAGCAAGAACCACATGATTGTCCAAGTCAAGAATTTGACAGTGCATTTAAGGAATTCTATTCAAACTTAAAATCTGCAATACTAGACGATGACCATGCAAAAAGCTTTCAACTGTTAGAGAATGCTAGAAGCATTGCAAAGACATTAATTAGCCGGTGA	2868	0.4219	MIEVGYKYRFFGQDAETAARVLGIYAHMNHNFLTASIPTIRLHVHVRRLVSAGYKVGVVKQTETASIKAHGVNRAGPFCRGLSALYTKATLEAAQDLGGGEDECGSVSNYLLCVVEKSISGERKSKCGVEGGFDARIGIVGVEISTGDVVYGEFNDNFLRSELEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVERASRDCFTDGGAFAEVITLYENMYVDSSSDSMQGNELTEHKSQQMEVKEAMNLPDLVVEALALTIRHLKGFGFERILCSGALRPFVNNTEMTLSANTLLQLEVLQNNSDGSDSGSLLHTMNHTLTIFGSRLLRHWVTHPLCDQTLISARLNAVSEIAESMGTCNGMKNLGCFEEDSDVAIVQPQLAHILSLVLKALGRAPDIQRGITRIFHCTATPSEFISIIQAILSAGKRLQQLNIGEGDNDNNKKLYSGLLKKLISTASSANVIGKAAKMLSSLNKDSANKGDLTNMIVSTEGQFPEVFTARKAFQMAVEQLDPLIGLYRKRLGMRNLEYMSVSGVTHLIELSSDVKVPSNWIKVNSTKKTIRYHPPEVVTALDELSLAKEKLTVACRAAWDSFLRDFSKHYAEFQAFVQALAALDCLHSLATLSRDKGYVRPGFVDDDEPVQIQFCSGRHPVLETTLQNNFVPNDTKLHAGREYCQIVTGPNMGGKSCYVRQVALIALMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQLGRSTFLEELSETSHILHRCTERSLVILDELGRGTSTHDGMAIAYATLHYLLKQKKSLVLFVTHYPKIASLETEFPGSVAAYHMSHMTAPDDSSKNSNDQENVTYLYKLVPGVSERSFGFKVAHLAQLPPHCISRGIVMASKLESLVNSRLHGRSGELLLEAPVIDQEQEPHDCPSQEFDSAFKEFYSNLKSAILDDDHAKSFQLLENARSIAKTLISR*	956

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g4564	955	Gene3D	DNA repair protein MutS, domain I	1	99	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	Pfam	MutS domain V	682	879	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	Pfam	MutS domain III	298	627	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	SMART	mutATP5	679	877	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	SUPERFAMILY	DNA repair protein MutS, domain I	2	90	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	Gene3D	-	635	901	IPR027417	-
	Psa6g4564	955	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	1	951	-	-
	Psa6g4564	955	Gene3D	-	295	628	-	-
	Psa6g4564	955	PIRSF	Msh6	1	932	IPR017261	GO:0006298\|GO:0030983
	Psa6g4564	955	SMART	DNAend	313	662	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	760	776	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	SUPERFAMILY	DNA repair protein MutS, domain III	297	632	IPR036187	-
	Psa6g4564	955	SUPERFAMILY	DNA repair protein MutS, domain II	108	308	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	1	951	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
	Psa6g4564	955	Pfam	MutS domain I	1	92	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	Pfam	MutS domain II	109	191	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	Gene3D	MutS, connector domain	105	292	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
	Psa6g4564	955	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	635	881	IPR027417	-
	Psa6g4564	955	Gene3D	-	477	603	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g4564	Psa-Chr6	397241892	397250612	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g4564	K08736		-	gmx:100789883	1458.74

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g4564	6	397241892	397250612	Psa6g4564	6	397241892	397250612	ECH