Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4561 ATGGTTAAGATAACAATAGTTGGAAGGGCAAGCGATGGATTACCTCTAGCACAAGGACTAAGATATGTGAATGAAGAAAATTCCTATCTTTCATTTTACAAGCAACAAGCTGAGTTTATACTCCAAGAAATTTCAAAAGGAGCATTGTCACATTCCATGATGACCATTCTCATTGACCATTACTGCTTCAATTTCTTGGTAGAAAATGGAGTTGTTTACATTGTTGTGTGTGAGTTCGCATACCCAAGAAAACTAGCATTTCATTACTTACAAGACATACAAAAAGAGTTTGACAAGTTTGATAAAACCCTAATAGGAAAAATCACAAAACCATACAGCTTTGTCAAATTAGATGGTATAATTGCAAGGTTTAGTAGACAATACATTGATACAAGAACTCAGGCTAACTTATCAAAACTTAATCTCAAAAGGAAACAAGATTTAGAAATTGTTACAGAAGAAGTGTCTAACATTTTAGAAAGGAGGAGAAATTCAGAAACAATAAGAAGGTTACAAGTTAGACCTGAACCTGCATCCTCAATATGGTGTTCTCCAAGACTTGAGGTGATTGCTATGAAATGGACACCAATTATGATCTTGGTGATTACTTCTATTGCTCTAATATGGGCTAGTTTAGTCCTCACAAACGACTTTGTTATTTGA 663 0.3424 MVKITIVGRASDGLPLAQGLRYVNEENSYLSFYKQQAEFILQEISKGALSHSMMTILIDHYCFNFLVENGVVYIVVCEFAYPRKLAFHYLQDIQKEFDKFDKTLIGKITKPYSFVKLDGIIARFSRQYIDTRTQANLSKLNLKRKQDLEIVTEEVSNILERRRNSETIRRLQVRPEPASSIWCSPRLEVIAMKWTPIMILVITSIALIWASLVLTNDFVI* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4561 220 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 220 IPR044565 GO:0005484|GO:0006888|GO:0006890
Psa6g4561 220 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Psa6g4561 220 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Psa6g4561 220 Gene3D Longin domain 1 129 - -
Psa6g4561 220 CDD Longin 5 128 IPR010908 -
Psa6g4561 220 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 220 - -
Psa6g4561 220 SMART Longin_2 36 120 IPR010908 -
Psa6g4561 220 ProSiteProfiles Longin domain profile. 6 99 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4561 Psa-Chr6 397174957 397176359 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4561 K08517 - gmx:100781527 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4561 6 397174957 397176359 Psa6g4561 6 397174957 397176359 ECH