Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4534 ATGAATTCAATAGCCCTTTTAGGTCTAAGGAAAAGGGTAGTAAACAAAATTTCCAATTTTTTTATTGTTCGACGGAGATTATGTAGTCACACTTTTGATGGTAATAATGGGTTTGACTGCATTGAGGAGCCTTTGAGAAAAATAGTTTCAGATTTTGATTCTACTTTGGATGAAAGGTTCAATTTAAACGACGATTCAAGCTGTGATCAAAAGCCCTTTTCACTTAGAAAGGGGTTCTTAGAGTCTGTGAAGTTAGATGCTAAGAGGGCCCTTGAGGTTCTTAGACAAGATGGTCCTGGTCTTGATGCTAGGTTGATTTTAGAGGAGTTGAGTATAAGACCTTCGGGGATTCTTGTTAGAGAGGTTCTCTTTGGAATTTTGAAGAGCATTAATAGCGAGAATAAGACCAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTAGTCAGCAAGAGGATTACCGGCACACTGCGAATGCCTATCACTTGATTATGAACATATATGCTGAATGCGAAGAGTTTAGGGCGTTGTGGAGATTGGTTGATGAAATGATTGAGAAAGGTTATCCGGCTACTGCTCGTACTTTCAATGTTTTGGTTCGGACTTGTGGTGAGGCAGGCTTGGCGAAGACGTTGGTGGAGAGGTTCATAAAATCGAAGAACTTTAGCTATAGGCCTTTTAAGCATTCCTACAATGCAATTCTACATTGTTTTCTTGTTTTAAACCAATACAAATTGATTGAGTGGGTTTATGAACAGATGTTGCTTGATGGTTTTTCATCAGATGTTTTGACTTATAATATTGTCATGTATGCCAAGTATAGACTTGGAAAGGTGGATCAGTTCCACATACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCGGATTTTCATACCTTCAACATTCTTCTTCATGCTCTTGGTAAAGGGGACAAACCACTTGCTGCTCTTAATCTTTTAAATCACATGAGAGAAACAGGTATAGAGCCTACAGTACTTCATTTTACCACATTGATAGATGGACTCAGCAGAGCTGGGAATTTGGATGCTTGCAAATATTTTTTCGATGAAATGACAAAGAACGGGTGCGTGCCAGATGTGGTGGCGTACACTGTTATGATAACGGGATATGTAGTGGCTGGTGAGCTTGAGAAAGCACAGGAAATGTTTCAAGAGATGCTTTCCAAGGAGCAAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGGTTATGTATGGCAGGGAAATTTGATGAAGCACTCTCAATGTTCAAGGAAATGGATAGGAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACATTAGTGAATTGTTTGCGGAATGCCGGAAGGGTTGCTGATGCTCGTGAGGTGATAAGACAAATGATGGAGACAGGGAAGTATGCCCACTTACTTTCAAGATTCAAAGGGTTTAAGATGTAG 1452 0.3967 MNSIALLGLRKRVVNKISNFFIVRRRLCSHTFDGNNGFDCIEEPLRKIVSDFDSTLDERFNLNDDSSCDQKPFSLRKGFLESVKLDAKRALEVLRQDGPGLDARLILEELSIRPSGILVREVLFGILKSINSENKTRCAKLAYKFFVWCSQQEDYRHTANAYHLIMNIYAECEEFRALWRLVDEMIEKGYPATARTFNVLVRTCGEAGLAKTLVERFIKSKNFSYRPFKHSYNAILHCFLVLNQYKLIEWVYEQMLLDGFSSDVLTYNIVMYAKYRLGKVDQFHILLDEMGRNGFSPDFHTFNILLHALGKGDKPLAALNLLNHMRETGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMTKNGCVPDVVAYTVMITGYVVAGELEKAQEMFQEMLSKEQVPNVFTYNSMIRGLCMAGKFDEALSMFKEMDRKGCSPNSVVYITLVNCLRNAGRVADAREVIRQMMETGKYAHLLSRFKGFKM* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4534 483 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 482 - -
Psa6g4534 483 SUPERFAMILY TPR-like 368 468 IPR011990 GO:0005515
Psa6g4534 483 Gene3D Tetratricopeptide repeat domain 243 396 IPR011990 GO:0005515
Psa6g4534 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Psa6g4534 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Psa6g4534 483 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
Psa6g4534 483 TIGRFAM PPR: pentatricopeptide repeat domain 337 369 IPR002885 -
Psa6g4534 483 TIGRFAM PPR: pentatricopeptide repeat domain 440 469 IPR002885 -
Psa6g4534 483 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Psa6g4534 483 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Psa6g4534 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Psa6g4534 483 PANTHER OS10G0506000 PROTEIN 1 482 - -
Psa6g4534 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Psa6g4534 483 Pfam PPR repeat family 402 449 IPR002885 -
Psa6g4534 483 Pfam PPR repeat family 263 310 IPR002885 -
Psa6g4534 483 Pfam PPR repeat family 332 379 IPR002885 -
Psa6g4534 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Psa6g4534 483 Pfam PPR repeat 231 260 IPR002885 -
Psa6g4534 483 Gene3D Tetratricopeptide repeat domain 117 239 IPR011990 GO:0005515
Psa6g4534 483 Gene3D Tetratricopeptide repeat domain 397 470 IPR011990 GO:0005515
Psa6g4534 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Psa6g4534 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4534 231 469 Glycosyltransferase AT1G05670 32.218 1.41e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4534 - - ccaj:109794849 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4534 6 395224047 395225498 Psa6g4534 6 395224047 395225498 ECH