Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4495 ATGTGGCCATTCAGCAAAAAAGGGGTTTCTGGATTTTCATGGAGTTCCACTGCTGAGCAAGTTACTCATGGAATCGATGCATCTGGCTTCACTGCCATTGTCACTGGAGCATCTAGTGGTATTGGTGTTGAGACTACGCGTGTTCTTGCTTTACATGGTGTTCATGTGATTATGGCCATTAGAAATATAGCTGCTGCCAGAGATGTCAAAGAAGCAATACTTAAGGAGATTCCCTCGGCGAAAATTGATGTCATGGAGTTAGATCTTAGTTCAATGGCATCTGTTAAGAAATTTGCATCAGAATTTATTTCCTCTGGTCTCCCATTGAACATCTTGATAAACAATGCGGGAGTTATGGCGTGCCCTTTCATGCTGTCCAAGGACAACATTGAACAACAATTTGCCACAAACCACTTAGGTCATTTTCTCTTGACACATCTTTTGTTGGACACTATGAAGAAAACAGCACATGAAAGTAACAAAGAAGGAAGAATTGTTAATGTCTCCTCAGAGGCTCACAAATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATCAATGAACAATCAAGTTACAACAGCTGGCGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAGCTAGCAAAACGTCTCAAAGATGATGGGGTGAATATCATTGCAAATTCTCTTCATCCAGGAGCCATTGTGACCAATCTTTATCGTCATACCAGTGCAATCAACGGTATAGTAAATGCGGTTGGCAGACTTGTGATGAAAAATGCTCAGCAGGGAGCAGCTACAACATGCTATGTAGCATTGCATCCACAAGTGAAGGGAGTTAGTGGTGAGTATTTTTCAGACAGTAATGTGTGCAAAACAACCTCACAAGGGAAGGATGCTGATTTGGCTAAGAAACTCTGGGATTTTAGCATTAGTTTGATTGAGGAGAAATAG 948 0.4093 MWPFSKKGVSGFSWSSTAEQVTHGIDASGFTAIVTGASSGIGVETTRVLALHGVHVIMAIRNIAAARDVKEAILKEIPSAKIDVMELDLSSMASVKKFASEFISSGLPLNILINNAGVMACPFMLSKDNIEQQFATNHLGHFLLTHLLLDTMKKTAHESNKEGRIVNVSSEAHKFAYSEGIRFDKINEQSSYNSWRAYGQSKLANILHANELAKRLKDDGVNIIANSLHPGAIVTNLYRHTSAINGIVNAVGRLVMKNAQQGAATTCYVALHPQVKGVSGEYFSDSNVCKTTSQGKDADLAKKLWDFSISLIEEK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4495 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Psa6g4495 315 Pfam short chain dehydrogenase 31 178 IPR002347 -
Psa6g4495 315 Gene3D - 20 315 - -
Psa6g4495 315 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Psa6g4495 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Psa6g4495 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Psa6g4495 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Psa6g4495 315 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Psa6g4495 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Psa6g4495 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Psa6g4495 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Psa6g4495 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Psa6g4495 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Psa6g4495 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4495 Psa-Chr6 393419446 393423432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4495 33 170 Acyl Lipid Metabolism Gene Families AT1G62610 31.293 6.34e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4495 - - gmx:100796920 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4495 6 393419446 393423432 Psa6g4495 6 393419446 393423432 ECH