Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4493 ATGGACGCTCACACTCCTCTCCTCAACGGCGCTGCCTCTTCCTCTCCGGCGTTGTTGGAGGAAGACGGTGATTACGTGGAAGTGAAAGGGTTTGAACAAGCGAGAAAGGTTTTCGCGATTGAAACAGCGAGGATATGGAAAATTGCATTGCCGATAGTTTTCAATATTTTGTGCCAATACGGTGTTAACTCTATCACTAATATCTTCGTCGGTCATCTCGGTGATATTGAACTCTCTGCTATTTCTCTTATTAACTCTGTCATTGGCACTTTCGCTTTTGGCTTCATGTTAGGTATGGGGAGTGCGACAGAGACGCTATGCGGTCAAGCTTTTGGAGCTGGAGAAGTTCAAATGCTTGGTGTTTACATGCAACGTTCATGGATAATTTTATTTGTGACGAGTTTATTCCTCTTGCCGATATACATTTTTGCTGCTCCAATTTTGAAACTTCTTGGCCAACAGAAAGATATGGCTGATCTTGCTGGAAGTTTTGCACTTTTAGTAATTCCTCAATTTCTCTCGCTTTCCTTAAATTTTCCAACGCAAAAGTTCCTTCAGTCTCAGAGTAAGGTTAGTGTCATTGCGTGGATTGGGTTAGTGGCTCTGATTTTGCATATTGGCTTGCTCTGGCTCTTGATTTATGTATTCGAGTTAGGCTTAACCGGTGCAGCGATTGCATTCGATGTTACGAGTTGGGGAATTACATTGGCTCAACTTGTTTATGTGGTGGGTTGGTGTAAGGATGGATGGAATGGATTGTCGTGGTTGGCTTTTAAGGATATATGGTCCTTTGTTAGGCTATCGATTGCATCGGCTGTTATGCTTTGCCTTGAAGTTTGGTATATGATGAGTCTCATTGTTCTTGCTGGTCACCTTGATAATGCAGTGATTGCTGTTGATTCTATCTCTATATGCATGAATTACAATGGATGGGAAGGCATGATCTTCATTGGAGTAAATGCAGCTATAAGTGTTCGAGTTTCCAATGAACTTGGACTTCGACATCCAAGAGCAGCTAAATACTCTGTCTATGTGACAGTCTTTCAATCTCTTTTCATGGGAATATTCTTCATGGGTGTTATTTTGCTAACCAAGGACTATTTTGCCATCATTTTTACCAATAGCAAGACTTTGCAAGTGGCGGTTGCAAAACTAGGAGGTCTCCTTGCCGTCACAATGGTTCTAAACAGCGTTCAACCAGTGATTTCTGGTGTTGCTGTTGGAGGTGGATGGCAGGCCTTGGTGGCTTACATCAACATAGGTTGCTATTACTTGTTTGGGCTTCCATTAGGGTACCTTCTTGGTTATGTTGCAGAATTGGGGGTTAAGGGACTTTGGGGAGGTATGATATGTGGAATTCTCCTCCAGACCTTGCTGCTCTTGGGAATACTTTACAAAACCAATTGGAACAAAGAGGTCGATGACACAACTGCACGCGTGCAGCAGTGGGGTGGACGATCCGCAGAAGTTGACAAGACATTGGCTTCTTCATAA 1494 0.4304 MDAHTPLLNGAASSSPALLEEDGDYVEVKGFEQARKVFAIETARIWKIALPIVFNILCQYGVNSITNIFVGHLGDIELSAISLINSVIGTFAFGFMLGMGSATETLCGQAFGAGEVQMLGVYMQRSWIILFVTSLFLLPIYIFAAPILKLLGQQKDMADLAGSFALLVIPQFLSLSLNFPTQKFLQSQSKVSVIAWIGLVALILHIGLLWLLIYVFELGLTGAAIAFDVTSWGITLAQLVYVVGWCKDGWNGLSWLAFKDIWSFVRLSIASAVMLCLEVWYMMSLIVLAGHLDNAVIAVDSISICMNYNGWEGMIFIGVNAAISVRVSNELGLRHPRAAKYSVYVTVFQSLFMGIFFMGVILLTKDYFAIIFTNSKTLQVAVAKLGGLLAVTMVLNSVQPVISGVAVGGGWQALVAYINIGCYYLFGLPLGYLLGYVAELGVKGLWGGMICGILLQTLLLLGILYKTNWNKEVDDTTARVQQWGGRSAEVDKTLASS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4493 497 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 479 - -
Psa6g4493 497 PANTHER PROTEIN DETOXIFICATION 15 479 - -
Psa6g4493 497 Pfam MatE 271 433 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa6g4493 497 Pfam MatE 51 210 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa6g4493 497 CDD MATE_eukaryotic 41 473 IPR045069 GO:0042910|GO:1990961
Psa6g4493 497 TIGRFAM matE: MATE efflux family protein 51 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4493 Psa-Chr6 393396226 393399742 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4493 K03327 - gmx:100799559 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4493 6 393396226 393399742 Psa6g4493 6 393396226 393399742 ECH