Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4464 ATGCAAATCCTATGTAGTAAAACTGCTACTCATACCTTTTCTCTATATGGCTTCCATGAAACTTGTTTGCGACTTCTCTCATTCTGCAACTCAAACTCACTCAGAGAAGGAGTATGCATTCATAGCCCCATAATCAAACTGGGTCTTCAACATGACTTGTATTTAAACAACAATTTGTTATCTTTGTATGCAAAATGCTTTGGAGTTCATCACGCACGCCATTTGTTCGATGAAATGCCTTGCAGAGATGTTGTATCATGGACCACTGTTCTGTCTTCTCACACCAAGAATAAATATCATTTTGATGCACTTGAATTGTTTTATATGATGTTAAGTTCAGGTCAGTACCCGAACGAGTTTACATTGTCGAGTGCATTAAGATCATGTTCTGCTTTAGGGGAGTTTGATTGTGGGATGCAAATTCATTCATCTGTTGTGAAGCTTGGGTTAGAGATGAATCCTTTTCTCGGCACTTCTTTGATTGAGTTTTATACGAAAAGTTGTTGTAGTAGTGTTGAAGGGTATAAATTGCTTTCGTTGGTGAGGAATGGTGGTGATGTTGTGTCTTGGACAACGATGATTTCTTCTTTAGTGGAAACTGGTAAATGGGGTGAATCTTTTGAAATCTATGTCAAAATGACTGAAGCAGGTGTTTACCCGAATGAATTCACGTTTGTTAAACTCTTAGGTGCAGTGTCTTCTTTTCTTGGCTTGGCTTATGGGAAAATGTTGCATGCACAGCTAATTATATTTGGGGCTGAAATGAATTTGGTGTTAAAAACAGCTGTTGTTGATATGTATTCAAAATGCAGAAGGATGGAAGATGTTATTAAGGTCTCCAATTTGACACCTGAATATGATGTGTGCTTATGGACCACCATTATCTCTGGATTTAATCAAAATTTGCAGGTTAGAGAGGCTGTCACGGCATTTCTCGATATGGAGTTATCTGGCATCATACCAAATAATTTTACGTATTCTAGTTTATTAAATGGTAGCTCCTCGATTTTATCAGTGCACCTAGGGGAACAATTCCATTCGCGGGTTATAATTATTGGACTTGAGGATGATCTTTTTGTAGGAAATGCACTGGTTGATATGTACATGAAATGCTCCTGCAGCACTTCAAATGCTGTGAAAGCTTTTAGAGGGATAGCATCACCGAATGTCATCTCTTGGACTTCTTTGATTGCCGGTTTTACAGAAAATGGATTAGAAGAAGAATCTTTCCAGTTGTTTGCTGAGATGCAAGCAGCAGGAGTACAACCAAATTCATTTACACTGTCTACCATTCTTGGAGCTTGCAGCAAAATGAGGTCTGTTGCTCCAACTATGATGCTCCATGGACATATAATAAAAACAAAAGCAGATATAGATGTAGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGACGGATGAGGCATGGTCTGTAATTGATATGATGGAACGTAGAGATCCCATCACATACACATGTTTATCTGCAAGACTAAACCAGAAGGGGGATCATGGAATGGCATTAAAAGTTTTCATTCACATGTGCAATGATGGGATTAAGATGGATGAATTCAGTTTGGCAAGTTTTTTATCAGCTGCAGCTGGTTTAGGCACAATGGAAGCTGGAAAACAGTTGCATTGTTATTCATTCAAATCAGGGTTCCAGAGATATAACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAATGTGGTAGTGTGCATGATGCATATAGAGCTTTCGAAGATATAAATGCGCCAGATGCATTTTCATGGAATGGTTTGATATCTGGGTTGGCATCAAATGGATATATAACCCATGCTCTTTCTGCTTTTGATGAGATGAGGTTAGCAGGAGTTAAACCTGATGCTATTACACTCTTATCACTGATTTCTGCTTGCAGCCATGGTGGTTTATTAGACCTAGGTCTTGAGTATTTCTATTCTATGGAAAAAGTATACCATATAACACCAAAACTGGATCACTTTGTGTGTTTAGTTGATCTCCTAGGTAGAGGTGGCCGCCTAGAGGAAGCTATGGGGGTTATTGAAACAATGCCGTTCAAGCCAGACTCTTTGATTTGTAAAACTTTATTAAATGCTTGCAGTTTACATGGAAATGTTGCTCTAGGAGAAGATATGGCAAGGAGATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGCTTCTTGCAAACTTATACGACAGTGCTGGACTCTCTGATTTTGGAGAGAAGACACGTCGGTTGATGAGAGAAAGAGGTTTAAAGAGAAGTCCCGGGCAGTGCTGGATGGAGATAAGAAGCAGAGTTCATCACTTCTCGGCAGGAGAGAAGATTAATGATGAGATTAATGAAAAGCTGAAGTTTCTTACAGCTGAATTTAGGAATAGAGGGTATCAATACCAAGAGAATGAAGATAAGTTATACCACTCAGAGCAATTGGCAGTTGCATTTGGTGTTCTTAATGTACCAGCTATGGCTCCAATACGCATATACAAGAATTCACTGATCTGCCCTCACTGTCATACTTTTATAATGCTTTCAACCAAAGTGGTTGGTAGGGAGATAATTTTGAGGGATAGGAAACGATTCCATTTCTTTAAGGATGGCCAGTGTTCTTGCAGAGGTCATCCCTGA 2652 0.3922 MQILCSKTATHTFSLYGFHETCLRLLSFCNSNSLREGVCIHSPIIKLGLQHDLYLNNNLLSLYAKCFGVHHARHLFDEMPCRDVVSWTTVLSSHTKNKYHFDALELFYMMLSSGQYPNEFTLSSALRSCSALGEFDCGMQIHSSVVKLGLEMNPFLGTSLIEFYTKSCCSSVEGYKLLSLVRNGGDVVSWTTMISSLVETGKWGESFEIYVKMTEAGVYPNEFTFVKLLGAVSSFLGLAYGKMLHAQLIIFGAEMNLVLKTAVVDMYSKCRRMEDVIKVSNLTPEYDVCLWTTIISGFNQNLQVREAVTAFLDMELSGIIPNNFTYSSLLNGSSSILSVHLGEQFHSRVIIIGLEDDLFVGNALVDMYMKCSCSTSNAVKAFRGIASPNVISWTSLIAGFTENGLEEESFQLFAEMQAAGVQPNSFTLSTILGACSKMRSVAPTMMLHGHIIKTKADIDVAVGNALVDAYAGGGMTDEAWSVIDMMERRDPITYTCLSARLNQKGDHGMALKVFIHMCNDGIKMDEFSLASFLSAAAGLGTMEAGKQLHCYSFKSGFQRYNSVSNSLVHLYSKCGSVHDAYRAFEDINAPDAFSWNGLISGLASNGYITHALSAFDEMRLAGVKPDAITLLSLISACSHGGLLDLGLEYFYSMEKVYHITPKLDHFVCLVDLLGRGGRLEEAMGVIETMPFKPDSLICKTLLNACSLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDSAGLSDFGEKTRRLMRERGLKRSPGQCWMEIRSRVHHFSAGEKINDEINEKLKFLTAEFRNRGYQYQENEDKLYHSEQLAVAFGVLNVPAMAPIRIYKNSLICPHCHTFIMLSTKVVGREIILRDRKRFHFFKDGQCSCRGHP* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4464 883 Gene3D Tetratricopeptide repeat domain 18 135 IPR011990 GO:0005515
Psa6g4464 883 Gene3D Tetratricopeptide repeat domain 545 794 IPR011990 GO:0005515
Psa6g4464 883 Pfam E motif 708 770 IPR046848 -
Psa6g4464 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Psa6g4464 883 Gene3D Tetratricopeptide repeat domain 136 238 IPR011990 GO:0005515
Psa6g4464 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 625 IPR002885 -
Psa6g4464 883 PANTHER - 287 535 - -
Psa6g4464 883 PANTHER - 375 807 - -
Psa6g4464 883 PANTHER - 212 441 - -
Psa6g4464 883 PANTHER - 121 331 - -
Psa6g4464 883 PANTHER - 22 214 - -
Psa6g4464 883 Gene3D Tetratricopeptide repeat domain 447 544 IPR011990 GO:0005515
Psa6g4464 883 Gene3D Tetratricopeptide repeat domain 341 446 IPR011990 GO:0005515
Psa6g4464 883 Gene3D Tetratricopeptide repeat domain 242 340 IPR011990 GO:0005515
Psa6g4464 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Psa6g4464 883 Pfam DYW family of nucleic acid deaminases 807 881 IPR032867 GO:0008270
Psa6g4464 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Psa6g4464 883 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Psa6g4464 883 TIGRFAM PPR: pentatricopeptide repeat domain 593 627 IPR002885 -
Psa6g4464 883 TIGRFAM PPR: pentatricopeptide repeat domain 391 424 IPR002885 -
Psa6g4464 883 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Psa6g4464 883 TIGRFAM PPR: pentatricopeptide repeat domain 464 489 IPR002885 -
Psa6g4464 883 TIGRFAM PPR: pentatricopeptide repeat domain 290 322 IPR002885 -
Psa6g4464 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Psa6g4464 883 Pfam PPR repeat 464 489 IPR002885 -
Psa6g4464 883 Pfam PPR repeat 666 689 IPR002885 -
Psa6g4464 883 Pfam PPR repeat 492 522 IPR002885 -
Psa6g4464 883 Pfam PPR repeat 565 586 IPR002885 -
Psa6g4464 883 Pfam PPR repeat 85 114 IPR002885 -
Psa6g4464 883 Pfam PPR repeat family 590 638 IPR002885 -
Psa6g4464 883 Pfam PPR repeat family 388 436 IPR002885 -
Psa6g4464 883 Pfam PPR repeat family 186 231 IPR002885 -
Psa6g4464 883 Pfam PPR repeat family 287 332 IPR002885 -
Psa6g4464 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Psa6g4464 883 PANTHER BNACNNG07920D PROTEIN 22 214 - -
Psa6g4464 883 PANTHER BNACNNG07920D PROTEIN 121 331 - -
Psa6g4464 883 PANTHER BNACNNG07920D PROTEIN 287 535 - -
Psa6g4464 883 PANTHER BNACNNG07920D PROTEIN 212 441 - -
Psa6g4464 883 PANTHER BNACNNG07920D PROTEIN 375 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4464 Psa-Chr6 391452220 391455388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4464 103 882 Glycoside Hydrolase AT3G49170 33.045 1.72e-145 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4464 - - gmx:100791770 1350.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4464 6 391452220 391455388 Psa6g4464 6 391452220 391455388 ECH