Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4447 ATGGAAGGAAATATTAGCTCATCAAGCAATTTGCATGAAGAAAGTACTCATATGTCAAAAGATTCTCCAGAGACTTTTCCACGAGAAGTTCAAACAGAGATTGGCCAAGATTTAGTTGTGGGTGAGCCTGAGTTTGTTAGCTCTAAGTCTGGCGATAATTCAGCTTTCTTATTGAATGACTATCTTGGAAATGGCAAAGCTGGCAATACCACTTTAAAAGAAAACGATGGGGATGTGTCTAGGGAAGAAGACTTTGATGAGGTCAATGTAGAGCACCAGGAGACTTTTTTGGGGCACACCAGTCCAATCAGCCGGTGCCGCTTCTCTGCATCTGGAAACAATATTGCTAGTGCTTCTCTAGATGGCACTGCCAGGATATGGACATACGATGCATCAACTCCGGCATCTAGAAATGCAACCATATATTGCGGTACTGAAATTCTATCACTTGACTGGGAGTGCAAATCAGACCGCTTGCTTCTGATAGGTACATCTGATGCGTGCATTAAGGCATGGAATGTGGACGCAAAGAGAGTTGTTTGTGACCTTAATACAACTGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCTGTTGAACCTATTTTTGTGTCTGCAGCAGCATCTGGAGGGTCTGGTTCCAACTATTTTGACAACCTGGGTTTTGCTTCACTCACTGTATGGAACATGAAGACATGGAAGGCCATGACAGTTCTTCCTCTTGGAGAAGATCCACCAGCAATTACTTCTATATGTTTCAATCACAATGGGAAGATTTTAGCAGCTTCTGCTGTTGATGGAATGATTCACATGTTCGACATGTCCGCTGGCCTACAAATCACTGGCTGGCCTGCACATGATTCTTCCATCAGTTCTATTCTTTTTGGACCGGATGAGACTAGCATTTTTAGCTTCGGCTCTGATGGGAAGATTTTTGAGTGGAGCTTGCAAAACCAAGGTCAAATCTTGTGGTCAAGAGACTGTAGTAGGTTTTGTTACCCTGTTAATGATTCAAATTATTATAGACGTGATATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCAGTTAGAGCACCCATATATCAGGTTCAGGATCATTTGAATGGTTGGAGAACACTTCCTCACGGTGCTCCTATTACTGCTGTAGATTGGCATCCGACTTTGCCCATTTTCTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACATCTTTACTATCATAG 1242 0.4267 MEGNISSSSNLHEESTHMSKDSPETFPREVQTEIGQDLVVGEPEFVSSKSGDNSAFLLNDYLGNGKAGNTTLKENDGDVSREEDFDEVNVEHQETFLGHTSPISRCRFSASGNNIASASLDGTARIWTYDASTPASRNATIYCGTEILSLDWECKSDRLLLIGTSDACIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGSGSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSICFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSFGSDGKIFEWSLQNQGQILWSRDCSRFCYPVNDSNYYRRDMALDANGRRLLVTSSSVRAPIYQVQDHLNGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLLS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4447 413 Pfam Anaphase-promoting complex subunit 4 WD40 domain 244 296 IPR024977 -
Psa6g4447 413 PANTHER OS05G0299300 PROTEIN 77 411 - -
Psa6g4447 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 127 - -
Psa6g4447 413 MobiDBLite consensus disorder prediction 1 33 - -
Psa6g4447 413 Pfam WD domain, G-beta repeat 381 408 IPR001680 GO:0005515
Psa6g4447 413 Pfam WD domain, G-beta repeat 93 127 IPR001680 GO:0005515
Psa6g4447 413 Gene3D - 29 211 IPR015943 GO:0005515
Psa6g4447 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 413 IPR001680 GO:0005515
Psa6g4447 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 137 IPR001680 GO:0005515
Psa6g4447 413 SMART WD40_4 372 410 IPR001680 GO:0005515
Psa6g4447 413 SMART WD40_4 233 274 IPR001680 GO:0005515
Psa6g4447 413 SMART WD40_4 277 316 IPR001680 GO:0005515
Psa6g4447 413 SMART WD40_4 134 173 IPR001680 GO:0005515
Psa6g4447 413 SMART WD40_4 89 128 IPR001680 GO:0005515
Psa6g4447 413 Gene3D - 340 411 IPR015943 GO:0005515
Psa6g4447 413 Gene3D - 212 339 IPR015943 GO:0005515
Psa6g4447 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 413 - -
Psa6g4447 413 SUPERFAMILY WD40 repeat-like 85 408 IPR036322 GO:0005515
Psa6g4447 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 319 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4447 K24760 - mtr:MTR_1g099380 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4447 6 390881098 390884916 Psa6g4447 6 390881098 390884916 ECH