Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4442 ATGGCAAAAAACTCTCACACTTTCTTGCCTCTAACATTTCTCTTATTCCTCACTTTTGTTGCAACTTCCCATGCCGGTGGCATAGCAATCTATTGGGGCCAAAACGGCAACGAAGGAACCTTATCGGAAACATGCGCAACCGGAAAATACACTCATGTCATCATAGCATTCCTCAACGTATTCGGCAACAGACAAACTCCAGAAATGAATCTCGCAGGTCACTGCAATCCATCAACAAACTCCTGCACAAAATTCAGCTCAGAAATCAAAGATTGCCAAAGTAAAGGAATCAAAGTCTTACTTTCTATCGGTGGCGGAATCGGAAGCTACACTTTATCTTCAATCGCAGATGCAAGAAACGTCTCAACGTTTCTATGGAACACTTTCTTGGGTGGCACGTCATCTTCAAGACCGTTAGGTGATGCTGTTTTAGACGGAATAGATTTCGATATTGAGCTTGGTTCAACGCAAAATTATCAACATCTTGCACGTTTTCTTAAAGGGTATTGTAGATTGGGAAAAAGAGTCTATCTTGGTGCAGCTCCTCAATGTCCAATTCCTGATAAATTTTTAGGCACTGCCCTTCAAACGGGTCTTTTCGACTTTGTTTGGGTTCAGTTTTATAACAACCCTCCTTGTCAATATAATGGGAACATAACTAATCTTGTGAGTTCTTGGAATCAATGGACAAAGAATGTTCCTGTTAGGAAGATATTTTTGGGGTTGCCGGCCGCTACGGCGGCTGCCGGAAGTGGTTTTATTCCGGCAGATGTGTTGAGTTCTGAGATTCTGCCTGTGATTAAGAAGTCAGGAAAGTATGGAGGAGTGATGCTTTGGTCTAGATTCTATGATTTGCAGACTGGGTATAGCAGTTCTATTAGTGGAAGCGTGTGA 894 0.4228 MAKNSHTFLPLTFLLFLTFVATSHAGGIAIYWGQNGNEGTLSETCATGKYTHVIIAFLNVFGNRQTPEMNLAGHCNPSTNSCTKFSSEIKDCQSKGIKVLLSIGGGIGSYTLSSIADARNVSTFLWNTFLGGTSSSRPLGDAVLDGIDFDIELGSTQNYQHLARFLKGYCRLGKRVYLGAAPQCPIPDKFLGTALQTGLFDFVWVQFYNNPPCQYNGNITNLVSSWNQWTKNVPVRKIFLGLPAATAAAGSGFIPADVLSSEILPVIKKSGKYGGVMLWSRFYDLQTGYSSSISGSV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4442 297 PANTHER ACIDIC ENDOCHITINASE 2 297 - -
Psa6g4442 297 PANTHER ENDOCHITINASE 2 297 - -
Psa6g4442 297 CDD GH18_hevamine_XipI_class_III 26 293 IPR045321 -
Psa6g4442 297 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Psa6g4442 297 SUPERFAMILY (Trans)glycosidases 23 293 IPR017853 -
Psa6g4442 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Psa6g4442 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Psa6g4442 297 Gene3D Glycosidases 26 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4442 Psa-Chr6 390661858 390663338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4442 11 297 Glycoside Hydrolase AT5G24090 62.671 5.09e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4442 K01183 - gmx:100818728 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4442 6 390661858 390663338 Psa6g4442 6 390661858 390663338 ECH