Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4404 ATGGGCCTAGTGCAGCATGAAGGAGGCCCCTGTGGCGTTTTGGCAACTATACAAACATTTGTGCTCAAATACATTATTTTCTTCAGTAATGAATTATCACGCGTTCCACAGAATCGGGGTCTGGGCGTGTCAAGTAAAAGTCACTCTGTTCCATCATATAATATTTATTCACTCACTGAAGATGTAAAAGATACATCTGTTCCTCAGCGCATAACTGTCTCAGACATTCATACCAGTAAATGTTGCTTCATAAAACCAACATTACCATTCTCCGAGCAACTTCACCTCAATCACAACCAAACTTCACCATTCTCCGAAGAAACTTTTGTCTCTGTTCATCAAGAACAAACCATCAAAGATTCGCTTGATCCTGTTTTCGCTCAGCGTCTCGCGAAACTTCTCATGCTTTCGTTTAATAATACCCTCAATGTTATCAAGATCAATGAAATCAAAAACAGTTTAGGGTTTCCTGATGATTATTTGATTCGAATCGTGCCGAGATATCCTAATTTGTTTCGGATTGTTAATGAGAGTGGTAGGAGAAGCTCTATGGCGATTGAGCTGATTCATTGGAACCCTAATTTTGCAGTTTCGGAAGTTGAAGCTTCCGCTTTGAGAAAAGGCTTGGAGCCGAATTTTTCGTGCTGTTTGCCTTCTAGTTGGGTGAAATCGTTGGAGAAATTTCACGAATTTGAATCGGTTCCTTATGTTTCGCCGTATTCGGATCCGAGAGTTTTGGTGGAAGGGTCGAAGGAGATGGAGAAGAGGAATGTGGGTTTGGTTCATGAGTTGTTGTCATTGACTCTTTGGAAGAAGGTTTCAATTATGAAATTGGGTCATTTCAAAAGAGAGTTTTTTTTGCCTGATAAGTTGAATGTGTTGTTGCTTAAGCATCCTGGGATTTTCTATGTTTCTAATAAGTATAGGATTTATACTGTTTTACTTAGAGAAGGGTATGTTGGGTCTCAGTTACTTGATAAGGATCCTCTTGTGGTTGTTAAGGAGAAATTTGGGGAAATTATGCAGGAAGGACTTCATGAGTATAACCAAAGGCGGTGTCTGGTTAATATCGAAAAGAAGAGAAACAAAGGTGTTCCTTTGAGTAGGGTGGATGAGGATGAAATGAAGGGTAGAAGAAGGAGAAGAAGAAGCGGTGAAGTTTCTGATGATGATGATGATGTTGTTGTTGATGGAGTAAATGGTAATAAGTTGGGAGGGTTGCTTGACCCTGAAGAGAGAAAACGGTTTTATAAAGTTCTTTTTGATGATGATGGATCATGA 1281 0.3958 MGLVQHEGGPCGVLATIQTFVLKYIIFFSNELSRVPQNRGLGVSSKSHSVPSYNIYSLTEDVKDTSVPQRITVSDIHTSKCCFIKPTLPFSEQLHLNHNQTSPFSEETFVSVHQEQTIKDSLDPVFAQRLAKLLMLSFNNTLNVIKINEIKNSLGFPDDYLIRIVPRYPNLFRIVNESGRRSSMAIELIHWNPNFAVSEVEASALRKGLEPNFSCCLPSSWVKSLEKFHEFESVPYVSPYSDPRVLVEGSKEMEKRNVGLVHELLSLTLWKKVSIMKLGHFKREFFLPDKLNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLLDKDPLVVVKEKFGEIMQEGLHEYNQRRCLVNIEKKRNKGVPLSRVDEDEMKGRRRRRRSGEVSDDDDDVVVDGVNGNKLGGLLDPEERKRFYKVLFDDDGS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4404 426 MobiDBLite consensus disorder prediction 366 389 - -
Psa6g4404 426 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 2 46 IPR025257 -
Psa6g4404 426 Pfam Plant organelle RNA recognition domain 105 344 IPR021099 GO:0003723
Psa6g4404 426 MobiDBLite consensus disorder prediction 366 393 - -
Psa6g4404 426 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 95 400 IPR045040 GO:0003723
Psa6g4404 426 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 95 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4404 Psa-Chr6 388521326 388524509 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4404 - - mtr:MTR_3g029990 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4404 6 388521326 388524509 Psa6g4404 6 388521326 388524509 ECH