Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4385 ATGACGGAACCTTCCAAAGTCATTCATGTTCGAAACGTGGGGCACGAAATATCTGAAAATGATTTACTTCAGCTATTTCAACGTTTTGGAGTAATAACCAAGCTTGTGATGTTGCGTGCAAAAAATCAGGCACTTATCCAAATGCAAGATGTTCCTTCTGCAATAAGTTCTTTACAATATTATGCAAATACTCAACCTAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCTCATCAAGAGCTAACAACAGTAGATCAAAGCCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTCTATCCCATAACAGTGGATGTACTGTATCAAGTTTTTTCTCCTCATGGATCTGTGGAAAAGATTGTGACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTACCAATCACAACAGAGTGCTATTACTGCGAGAACCGCACTTCAGGGTCGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGATCAAGAGACTTCACAAACCCTAGTCTTCCTACAGAACAGAAAGGCAGACCTTCACAACTTGGATATGGTGATGCAGGAAACATGTATGCTGGTGTTCAGGGTTCTGGAGCCAGAGCAGGTGGATATCAGCAGATGCCCAATGCCGCCGCCATTGCAGCTGCTTTTGGGGGAGGTTTGCCTCCAGGAATAACCGGGACAAATGATAGGTGTACACTTCTTGTCTCAAATCTTAATCCTGAGAGAATCGACGAGGACAAACTGTTCAACTTGTTCTCCCTTTACGGGAACATCGTGAGAATTAAACTTCTACGCAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTGGCAGTACACTTTCTGAAGGGAGCCATGTTGTTTGATAAGCGGCTCGAGGTGAACTTCTCAAAGCATCCAAACATAACCCAAGGTGCTGACACACACGATTACAGCAACTCAAATCTCAACCGTTTCAACCGAAATGCTGCTAAAAATTACCGTTATTGCTGCTCGCCAACAAAGATGATCCATTTATCCACACTTCCACAAGACATCACTGAGGAGGAGATTGTGACCCTTCTAGAGGAGCATGGAACCATTGTCAATAGCAAAGTCTTTGAGATGAATAGTAAGAAACAAGGCCTGGTTCAGTTTGAGACCGAGGAGCAGGCTACCGAAGCCCTCGTGTGCAAGCATGCCACCTCACTTTCCGGCTCGGTAATCAGGATCTCTTATTCTCAGTTGCAGAATATATGA 1335 0.4367 MTEPSKVIHVRNVGHEISENDLLQLFQRFGVITKLVMLRAKNQALIQMQDVPSAISSLQYYANTQPSIRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSAITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPSLPTEQKGRPSQLGYGDAGNMYAGVQGSGARAGGYQQMPNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPERIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVTLLEEHGTIVNSKVFEMNSKKQGLVQFETEEQATEALVCKHATSLSGSVIRISYSQLQNI* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4385 444 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 443 - -
Psa6g4385 444 SMART rrm1_1 368 437 IPR000504 GO:0003723
Psa6g4385 444 SMART rrm1_1 258 327 IPR000504 GO:0003723
Psa6g4385 444 SMART rrm1_1 7 76 IPR000504 GO:0003723
Psa6g4385 444 SMART rrm1_1 101 170 IPR000504 GO:0003723
Psa6g4385 444 Gene3D - 1 95 IPR012677 -
Psa6g4385 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Psa6g4385 444 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Psa6g4385 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 435 IPR000504 GO:0003723
Psa6g4385 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Psa6g4385 444 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Psa6g4385 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 340 - -
Psa6g4385 444 Pfam RRM-like domain 95 174 IPR021790 -
Psa6g4385 444 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 443 - -
Psa6g4385 444 Gene3D - 96 201 IPR012677 -
Psa6g4385 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Psa6g4385 444 CDD RRM4_PTBPH3 360 438 - -
Psa6g4385 444 CDD RRM3_PTBPH3 256 331 IPR034797 -
Psa6g4385 444 Gene3D - 356 441 IPR012677 -
Psa6g4385 444 SUPERFAMILY RNA-binding domain, RBD 255 440 IPR035979 GO:0003676
Psa6g4385 444 Gene3D - 254 350 IPR012677 -
Psa6g4385 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 441 IPR000504 GO:0003723
Psa6g4385 444 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 440 IPR006536 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4385 Psa-Chr6 384552071 384556737 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4385 K14948 - gmx:100819672 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4385 6 384552071 384556737 Psa6g4385 6 384552071 384556737 ECH