Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4276 ATGGGCGACAAAAGAAAAAAACACCGTCATCAACGCGACACAACCTCTCCTTCTTCCCCATCCTCTTCCTCCACCGACTCCGATTCAGACTCCGACCGCTCTTCCAAGCGCCGCCGTCGCCATCGCCGTGAAAAAGAGCGACGCAGAAGGAGCGATGGAAGCTCCAAACGCGAAAGGGAGAGTAAGAGAAAGGAAAAGAGAAAAAAGAGAGACAGAGAGAGGAAAAAATCCAAGCGGCACCACTATTCCGATGAATCCCAATCTTCCTCCGACGAGGAACTTCAACACAGGATTCAGCCCCAAACAGCACTCCGTGAAATGATGACCGAGTTTCCCAATGTTGGCAACGATTTGAAGCAGTTATTGCAAATGATTGATAATGGGCAAGCTGTGGATATAAAGGATATATCAGAAAAGTCTCTAGTGAAGCATTTGAAGAATCTCTTCCTTTCCTTAAATCTTAAGGAAAATGGGGATAGAGTTTTTTTACTGCCTTCTAAATCTCCCCCTACTTTAGATGTTGTTGGCCCTCTAATTCAATCTTATATGCATCCGATGAATGATCGAGCTGATCCTTCAGCTGCATTGCCTGAAACATGTTCCGTTCCGACAGAACAGATGGAAGATGACCCTTCAATAAAACCTCCCGAGGATCATTCTGTTGGTCCTAGAAAAAGGGTTATTGGTCCTGCAATGCCATCTGCTGAATTACTCGCCGCTGCTGCTAAATTAACAGAGGCACAGACTGCGTTCATAGAAGCTGAATTGGATGACGATACTGAACTATTTGTGGGACCTCCACCTCCTGCTATGGTTTCTGAAGCGGAATCAGCTAATGAGGCAGAACGTTTTGAGGAGGTTACCCGGATAATGGACGTTGAGATTGACAGCCCATACGACGTTCTTGGAGTTAACCATAATATGTCTGATGGTAACATAAAGAAAAAGTACTGGAAGATATCACTATTAGTTCATCCAGATAAATGCTCTCACCCACAAGCCAATCAAGCATTTATTAAACTAAATAAAGCTTTCAAAGAGTTACAAGATCCAGAAAAGCGGAAAGCAATGGATGATAAAATCAAACTCAAGCAAGAACAGGAGGACTTTAAGGCTGAGCTTAAAGTCATGCGAGAGACTGCACTGTGGAGAAGATCCCAAGGAATATCAATGGAAGGTGATGACGAGCTTCTGGCACAGACAGAGGTTAAAGTGGAACCCAAAAGAGATGAATGGATGACAACACTACCTCCGGAGAGAAAACCTGGTGGTATGACTATGCAATCAACCCAATTCAGCCGGGAAACAAAGGAAGGTAGAGGAGACACTAGTATTTGGACAGACACCCCTAATGACAGAGCTCAGAAAGCAAAGATGAATTATTTGGAAGCATACAATCAGGCCACTGCATTAGCCTCAAACGAAGAAGAAAATAAAAGGGCTAATACAGATGCAGATTTGGTGGACAAATACAACAAAGCAAAAAGATCAAAAACATTGGTGCAAAAACATCAAGAAGAGGTTGCTAGCAAATCCAAGAAAAAGTCCAAGCAACAGACTGAGAAGGGAGATAAAGAATGGGTGAGTCAACATCCATGGAAGCCATGGGATCGTGAAAAGGATCTAACGGCTGGGAGGATGAAAGTAAAACTTGATGCAGAAGGCATGTCTGAGGGATTATCTTCAAGGTTTAATTCTGGAAACTTTCAAAGGAACTTCCTATGA 1725 0.4336 MGDKRKKHRHQRDTTSPSSPSSSSTDSDSDSDRSSKRRRRHRREKERRRRSDGSSKRERESKRKEKRKKRDRERKKSKRHHYSDESQSSSDEELQHRIQPQTALREMMTEFPNVGNDLKQLLQMIDNGQAVDIKDISEKSLVKHLKNLFLSLNLKENGDRVFLLPSKSPPTLDVVGPLIQSYMHPMNDRADPSAALPETCSVPTEQMEDDPSIKPPEDHSVGPRKRVIGPAMPSAELLAAAAKLTEAQTAFIEAELDDDTELFVGPPPPAMVSEAESANEAERFEEVTRIMDVEIDSPYDVLGVNHNMSDGNIKKKYWKISLLVHPDKCSHPQANQAFIKLNKAFKELQDPEKRKAMDDKIKLKQEQEDFKAELKVMRETALWRRSQGISMEGDDELLAQTEVKVEPKRDEWMTTLPPERKPGGMTMQSTQFSRETKEGRGDTSIWTDTPNDRAQKAKMNYLEAYNQATALASNEEENKRANTDADLVDKYNKAKRSKTLVQKHQEEVASKSKKKSKQQTEKGDKEWVSQHPWKPWDREKDLTAGRMKVKLDAEGMSEGLSSRFNSGNFQRNFL* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4276 574 Pfam DnaJ domain 298 358 IPR001623 -
Psa6g4276 574 ProSiteProfiles dnaJ domain profile. 297 362 IPR001623 -
Psa6g4276 574 Pfam Protein of unknown function (DUF3752) 417 564 IPR022226 -
Psa6g4276 574 PRINTS DnaJ domain signature 299 317 IPR001623 -
Psa6g4276 574 PRINTS DnaJ domain signature 317 332 IPR001623 -
Psa6g4276 574 PRINTS DnaJ domain signature 333 353 IPR001623 -
Psa6g4276 574 Coils Coil 353 380 - -
Psa6g4276 574 Gene3D DnaJ domain 281 381 IPR036869 -
Psa6g4276 574 Coils Coil 501 521 - -
Psa6g4276 574 MobiDBLite consensus disorder prediction 497 543 - -
Psa6g4276 574 MobiDBLite consensus disorder prediction 559 574 - -
Psa6g4276 574 CDD DnaJ 298 350 IPR001623 -
Psa6g4276 574 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 574 - -
Psa6g4276 574 MobiDBLite consensus disorder prediction 423 443 - -
Psa6g4276 574 MobiDBLite consensus disorder prediction 1 95 - -
Psa6g4276 574 MobiDBLite consensus disorder prediction 61 77 - -
Psa6g4276 574 MobiDBLite consensus disorder prediction 200 221 - -
Psa6g4276 574 MobiDBLite consensus disorder prediction 555 574 - -
Psa6g4276 574 SUPERFAMILY Chaperone J-domain 270 355 IPR036869 -
Psa6g4276 574 MobiDBLite consensus disorder prediction 78 92 - -
Psa6g4276 574 SMART dnaj_3 296 353 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4276 Psa-Chr6 378899382 378909511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4276 263 362 Miscellaneous Gene Families AT5G49580 32.039 5.60e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4276 - - aip:107618276 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4276 6 378899382 378909511 Psa6g4276 6 378899382 378909511 ECH