Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3837 ATGCAGAGAGTAGCATACTCGTTCCCTGAGGAAGTACTCGAGCACGTTTTTTCGTTCATTGAATCGGACACAGACAGAGGCTCGATCTCGCTGGTATGCAAATCGTGGTACGAGATTGAGCGGTGGTGCAGACGGCGGGTGTTCGTCGGGAACTGCTACGCGGTGAGTCCGGCGATGGTGATAAAACGGTTTCCGAAAGTGAGATCTATCACACTGAAAGGGAAACCGCACTTTGCGGACTTCAATTTGGTACCGGAAGGTTGGGGTGGTTATGTATGTCCTTGGATCAAAGCTATGGCTGCTAGTTATCCGTGTTTGCAAGAGATTAGGCTTAAGAGAATGGTTATCACTGATGATTCTTTGGACCTTATCGCTAAATCGTTCAAGAATTTCACGGTTTTGGTGCTTACTTCTTGTGAAGGTTTCACTACGGAAGGACTTGCTGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGTTGGACTTGCGGGAGAGTGAAGTGGAGGACATTTGCGGTCATTGGCTAAGCCATTTTCCTGATTCATACACATCATTGGTTTCACTAAACATCTCTTGCTTGGCAAACGAGGTGAATTTTCCTGCACTAGAGCGCCTGGTTAGTAGGTGTCCTAACTTGCAGACGCTCAGGCTCAATCGTGCCGCACCCCTTGATAAGCTTGCCAGCCTTCTTAGGGGGGCTCCACAGCTTGCTGAGTTAGGCACTGGAGCCTACACGTCTGAGATGCGGCCCGAGGTCTTTTCAAATCTGGCGGCGGCATTTTCTGGGTGCATGCAAATGAAGAGCTTGTCTGGCTTTTGGGATGTCCTCCCATCCTACCTGCCTGCCGTTTATCCTGTATGCTCCAGACTCACATCACTAAACTTAAGTTATGCTACGATCCAAAGCCCGGATCTTATCAAACTTGTTGGTGAATGTGAGAGTTTGCAGCGGTTGTGGGTGTTGGATTACATTGAAGATGCCGGCCTTGACATGCTTGCTGCATCATGTAAGGATCTGAGGGAGTTAAGGGTGTTTCCATCTAATCCATTTGGGCTGGAACCAAATGTAGCATTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGTTGCCCCAAGCTCCATTCGGTTCTATATTTTTGTCGTCAAATGACCAATGCTGCCCTAACTATAATTGCTCGGAACAGGCCTAATTTGACTCGTTTTAGATTATGTATTATTGAGCCTCGCACTCCTGACTATCTTACTCGTCAACCTCTGGATGTTGGATTTGGAGCTATTGTTGAGCAATGTAAGAGTCTTCAGCGCCTTTCCCTCTCAGGGCTTCTCACCGACCGTGTTTTTGAGTATATTGGGACTTATGGGAAGAAGCTTGAGATGCTTTCTGTAGCTTTTGCCGGAGAAAGTGATTTGGGACTCCATCACGTCCTCTCCGGGTGTGACAACCTTAGGAAGTTGGAAATCAGGGACTGCCCCTTTGGTGACAAAGCTCTTTTAGCCAATGCTGCAAAATTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCCATGTGAGTTATGGAGCATGTAAACTGTTGGGTCTGAAGTTGCCGAGACTCAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATAATAGTCCCGTTGAGAAGCTTTATATATACAGGACAATTTCTGGGCCTAGATTGGACATGCCTGGTTATGTATGGACAATGGAAGATGATTCTGCATATCCTGAATGA 1752 0.472 MQRVAYSFPEEVLEHVFSFIESDTDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPAMVIKRFPKVRSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAASYPCLQEIRLKRMVITDDSLDLIAKSFKNFTVLVLTSCEGFTTEGLAAIAANCRNLRELDLRESEVEDICGHWLSHFPDSYTSLVSLNISCLANEVNFPALERLVSRCPNLQTLRLNRAAPLDKLASLLRGAPQLAELGTGAYTSEMRPEVFSNLAAAFSGCMQMKSLSGFWDVLPSYLPAVYPVCSRLTSLNLSYATIQSPDLIKLVGECESLQRLWVLDYIEDAGLDMLAASCKDLRELRVFPSNPFGLEPNVALTEQGLVSVSEGCPKLHSVLYFCRQMTNAALTIIARNRPNLTRFRLCIIEPRTPDYLTRQPLDVGFGAIVEQCKSLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCHVSYGACKLLGLKLPRLNVEVIDERGPPDSRPDNSPVEKLYIYRTISGPRLDMPGYVWTMEDDSAYPE* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3837 583 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Psa6g3837 583 SMART LRR_CC_2 430 453 IPR006553 -
Psa6g3837 583 SMART LRR_CC_2 154 191 IPR006553 -
Psa6g3837 583 SMART LRR_CC_2 479 503 IPR006553 -
Psa6g3837 583 SMART LRR_CC_2 128 153 IPR006553 -
Psa6g3837 583 SMART LRR_CC_2 370 394 IPR006553 -
Psa6g3837 583 SMART LRR_CC_2 103 127 IPR006553 -
Psa6g3837 583 SMART fbox_2 8 49 IPR001810 GO:0005515
Psa6g3837 583 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 576 - -
Psa6g3837 583 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Psa6g3837 583 Pfam Leucine Rich repeat 287 308 IPR001611 GO:0005515
Psa6g3837 583 Gene3D - 1 44 - -
Psa6g3837 583 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 576 - -
Psa6g3837 583 SUPERFAMILY RNI-like 66 532 - -
Psa6g3837 583 SUPERFAMILY F-box domain 7 40 IPR036047 GO:0005515
Psa6g3837 583 Pfam F-box 6 46 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3837 Psa-Chr6 334016043 334018898 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3837 K14485 - gmx:100809794 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3837 6 334016043 334018898 Psa6g3837 6 334016043 334018898 ECH
Psa3g0576 3 52415736 52419811 Psa6g3837 6 334016043 334018898 PCT