Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3575 ATGGAGCACAAGTATTTGTGGGTGGCTTGCTTTTTGTGGGCTTTAACATGCTCACTTCTTCCTTCTTTCTCTTATGGATTTATGAGAATTGATTTGAAGAAGAGAACTCTTGATCTTGATAGTATTAAAGCTGCTAGAATGGTAAGAGAAAAGCTAAGGTTAGGCAGACCCGTGTTGGGCGCATATGATCAGTACACCGGGAAACTAACCGATGATGATGCCATAGTACCTTTGAAGAATTATTTGGACGCACAATATTATGGAGAGATTGGAATTGGCTCACCCCCTCAGACCTTTAATGTCATATTTGATACCGGTAGTTCAAACCTTTGGGTTCCATCGTCCAAGTGCTATTTTTCTCTTGCCTGCTTGACCCATCGTTCGTACAAGTCAAAGAAATCCAAAACGTATACCAAAAACGGAACATCATGTAAAATACGTTATGGATCTGGAGCAATATCTGGTTTTTTCAGTCAAGATAATGTTAAACTTGGTGATATTGTTGTCAAGGATGTGGATTTCATTGAGGCTACCCGTGAAGGAAGTATTTCGTTTGTGCTAGCAAAGTTTGATGGATTATTTGGGCTTGGGTTTCAGGAGATCTCTGTTGAAAATGCTGTCCCAGTATGGTACGAAATGGTGCAGCAAAATCTTGTAAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGGAAATCCAAAAGCTAAAAAGGGTGGTGAGCTGATTTTGGGGGGTGCTGATCCCAATCACTACAAAGGAAAACATACATATGTTCCTGTCACTCAAAAAGGTTATTGGCAGATTGAAATGGGAGATTTTTTCATTGGAGGTCTCTCAACAGGTGTCTGCGAAGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTGACCGAAATCAACCATGCTATTGGAGCTGAAGGGGTTCTGAGCGTAGAATGTAAGGAAATCGTTACTGAATATGGAGAAATGATTTGGGATCTCTTGGTAGCAGGGGTACGACCTGGTGATGTATGTTCACAAGTTGGTTTATGTGTTGCCAAAAGAGATCAATCAAAGAGCATGGGAATTGAGATGGTGACCGAAAAGGAAGAGGGAGAGTTATCTGCTAAAGATACTGCTTTGTGCTCTTCCTGTCAAATGCTTGTGATTTGGATCCAGAATCAACTAAAGCGAAAGACAACCAAAGATAGAATATTCAACTACGTAAATCAACTGTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCCGTAGTAGACTGCAATAGCATTTATCAATTGCCAAACATTTCGTTTACCATCGGAGATAAATCTTTCGTCCTCAGTCCCGAGCAGTATATTTTGAAAACCGGAGAAGGTATTACACAAGTCTGTCTTAGTGGGTTTATTGCGTTTGACATTCCTCCTCCAAGGGGTCCTCTATGGATTCTTGGTGATATTTTTATGAGGGTATATCACACTATCTTTGACTATGGAAATCTTCAACTTGGTTTTGCTGAAGCTGCCTAG 1530 0.4111 MEHKYLWVACFLWALTCSLLPSFSYGFMRIDLKKRTLDLDSIKAARMVREKLRLGRPVLGAYDQYTGKLTDDDAIVPLKNYLDAQYYGEIGIGSPPQTFNVIFDTGSSNLWVPSSKCYFSLACLTHRSYKSKKSKTYTKNGTSCKIRYGSGAISGFFSQDNVKLGDIVVKDVDFIEATREGSISFVLAKFDGLFGLGFQEISVENAVPVWYEMVQQNLVSEKVFSFWLNGNPKAKKGGELILGGADPNHYKGKHTYVPVTQKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVTEYGEMIWDLLVAGVRPGDVCSQVGLCVAKRDQSKSMGIEMVTEKEEGELSAKDTALCSSCQMLVIWIQNQLKRKTTKDRIFNYVNQLCESLPSPNGESVVDCNSIYQLPNISFTIGDKSFVLSPEQYILKTGEGITQVCLSGFIAFDIPPPRGPLWILGDIFMRVYHTIFDYGNLQLGFAEAA* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3575 509 SUPERFAMILY Saposin 317 418 IPR011001 -
Psa6g3575 509 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 6 509 - -
Psa6g3575 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 288 299 IPR001969 GO:0004190|GO:0006508
Psa6g3575 509 Pfam Saposin-like type B, region 1 382 418 IPR007856 GO:0006629
Psa6g3575 509 Pfam Saposin-like type B, region 2 320 352 IPR008138 -
Psa6g3575 509 ProSiteProfiles Saposin B type domain profile. 379 420 IPR008139 -
Psa6g3575 509 ProSiteProfiles Saposin B type domain profile. 316 356 IPR008139 -
Psa6g3575 509 ProSiteProfiles Peptidase family A1 domain profile. 86 506 IPR033121 -
Psa6g3575 509 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 6 509 IPR001461 GO:0004190|GO:0006508
Psa6g3575 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Psa6g3575 509 Gene3D - 316 418 - -
Psa6g3575 509 SUPERFAMILY Acid proteases 27 508 IPR021109 -
Psa6g3575 509 Gene3D Acid Proteases 246 509 IPR021109 -
Psa6g3575 509 Gene3D Acid Proteases 28 244 IPR021109 -
Psa6g3575 509 Pfam Eukaryotic aspartyl protease 85 508 IPR033121 -
Psa6g3575 509 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Psa6g3575 509 PRINTS Pepsin (A1) aspartic protease family signature 238 251 IPR001461 GO:0004190|GO:0006508
Psa6g3575 509 PRINTS Pepsin (A1) aspartic protease family signature 288 299 IPR001461 GO:0004190|GO:0006508
Psa6g3575 509 PRINTS Pepsin (A1) aspartic protease family signature 482 497 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3575 Psa-Chr6 301102258 301106842 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3575 K08245 - gmx:547993 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0351 3 34413902 34417977 Psa6g3575 6 301102258 301106842 PCT